Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04613 ATGGCTCATGAAGATTGGGATCTCTTTGCCATAGTGAGAAGCTGCAAAGCTGCTACCTTTACAGCTTCTACCACCACTACAGAGACTCTACCACCAACCACAACCAATACTAGATCCCCTCAAGACACTACAACCTCTTGTTTGGCCCCTTCTACTGTTAGCCAAGAAGAAGACCCATTCTCTTTTCCCAATTATATTGTGCAACCTAGAACCAATGGGTTCCTAGAGCTACACCAATTGCTAAAGAATTTCAACCCCACCACCACTGCAACCACTAGCACTACTAGTGGCCATGGCATCAATCCCAACTCCACTTTTACTGAAGGGTTCATTGGACAACAGCAGATGCAGCAAAACCTCCACCATCCTATGCCTGCTCCCACAACTTACACCTCCACTACTGATTTTAACAGATTCCATCACCACCACCACCAACAACAACCCCAACCCCCAGAACAACAACTACCCATTCAAGTACCCCAAACCAATTCTATGGTGTTACCGAACACACAACCACAAACACCCAGATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGCCATGTGACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATATGGACAAAAACCCATCAAGGGTTCTCCATATCCAAGAAACTATTATAGATGCAGCAGTTGCAAAGGATGTGCGGCGAGGAAGCAAGTAGAGCGAAGCACAACAGAACCCAACATGTTTATTGTCACATACACCGGAGACCACAAGCACGCCAAACCCGTTCACCGGAATTCCCTCGCCGGAAGTACCCGGAACAAGCCATCCACGACCCGGTTATCAACCGGGTCACTCTCCAATGCTGTCTCAAGCTCCGCGCTTTCTCCCACCCCGTCGAAGTCAGATCCGCCGGAGAACGAAGAAGCACATGCTGCCGCCGGTGAACCCGAATGCCCTGACCCGGAAACGGGGCCCGAACCCATTTCCGATGACGACGATGTTTTGATACCCAACAACATGGCTGTTTTTTCAGATGTCTTCGAATTGGGACTGCAAAATTTTGACAGCGGGTCCAAGCAATCGGGTGGGTTGGATCAGAAAACTGTACACGGTTTGACCCGTTCCAGCTCTGAACCTGTTCTCCAATGA 1140 0.4886 MAHEDWDLFAIVRSCKAATFTASTTTTETLPPTTTNTRSPQDTTTSCLAPSTVSQEEDPFSFPNYIVQPRTNGFLELHQLLKNFNPTTTATTSTTSGHGINPNSTFTEGFIGQQQMQQNLHHPMPAPTTYTSTTDFNRFHHHHHQQQPQPPEQQLPIQVPQTNSMVLPNTQPQTPRSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTTEPNMFIVTYTGDHKHAKPVHRNSLAGSTRNKPSTTRLSTGSLSNAVSSSALSPTPSKSDPPENEEAHAAAGEPECPDPETGPEPISDDDDVLIPNNMAVFSDVFELGLQNFDSGSKQSGGLDQKTVHGLTRSSSEPVLQ. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04613 379 MobiDBLite consensus disorder prediction 25 56 - -
Seca9g04613 379 ProSiteProfiles WRKY domain profile. 192 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g04613 379 Gene3D WRKY domain 180 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g04613 379 MobiDBLite consensus disorder prediction 350 379 - -
Seca9g04613 379 FunFam WRKY transcription factor 22 180 251 - -
Seca9g04613 379 MobiDBLite consensus disorder prediction 252 334 - -
Seca9g04613 379 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 312 IPR044810 GO:0003700
Seca9g04613 379 MobiDBLite consensus disorder prediction 164 188 - -
Seca9g04613 379 MobiDBLite consensus disorder prediction 263 299 - -
Seca9g04613 379 SUPERFAMILY WRKY DNA-binding domain 192 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g04613 379 SMART WRKY_cls 197 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g04613 379 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04613 Seca-Chr9 127646111 127647690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04613 76 359 WRKY Transcription Factor Family AT4G01250 38.194 2.95e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca9g04613 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04613 - - aprc:113866622 418.698