Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04597 ATGGCTTCCGATCTCGAAGCTAAAGCCAAAGAGGCCTTCGTTGAAGATCACTTTGAACTTGCGGTGGACCTCCTTACTCAGGCCATTGATCTTGACCCCGACAAACCCGAACTCTATGCTGACCGTGCCCAAGCCAACATCAAACTCGCCAACTTCCCTGAGGCGGTTGCTGATGCGAACAAAGCAATAGAGTTGAATCCTTCTCTAGCAAAGGCATATTTACGCAAAGGTACTGCATGCATGAAGCTCGAAGAATATCAGACTGCTAAGACTGCTCTGGAGACAGGTGCCTCCTTGTCTGCAGACAAATCAAGATTTGCTAACTTGATCAAAGAATGTGATGAACTCATTGCAGCAGAATCTTATACCATGCCTATACAGGAAAAGGCTACAGCGCAGGAGGATGTATCTCCAAAAGATGTTCAGCCAGAGAAAGATCTTCCAGAGCAGCCTAAAGTGGCAGTAGCTAAACCTAAATATAGGTTAGTACAACTTTCTGATTGTTTGTCCTTTGCTAGCATTATTGTATATATATGGCATGAATTCTACCAGAAACCAGATGAGATGGTGGTAACAATATTTGCAAAGGGCATATCAAAGGAAAACCTTACTGTTGACTTTGGTGAACAAATATTAAGTGTTAGGATAAATGCTCCTGGAGAAGATGCATATGTTTTTCAACCTCGTCTATTTGGAAAGATCATTCCTTCCCGATGCCGGTATGATGTTTTGTCTACCAAAATTGAAATTCGTCTTGTGAAAGCTGAATCTATTCACTGGACATCACTAGAATTTACCAGAGAAATTACAGTTGCACAGAGGGCTAATGTTTCTTCAGTTACTGGAACTCCAAAACCTACTTACCCATCCTCAAAACCAACAAGAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAGGAGGAGAAAGAAGAAAAACTTGATGGTGATGCAGCATTGAACAAATTTTTCCGGGAAATATATCAAGATGCTGATGAGGATACAAGAAGAGCAATGAAGAAGTCATTTGTGGAGTCTAATGGAACAGTACTATCGACAAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAATTGAAGAAATGGGAATATTAA 1134 0.4136 MASDLEAKAKEAFVEDHFELAVDLLTQAIDLDPDKPELYADRAQANIKLANFPEAVADANKAIELNPSLAKAYLRKGTACMKLEEYQTAKTALETGASLSADKSRFANLIKECDELIAAESYTMPIQEKATAQEDVSPKDVQPEKDLPEQPKVAVAKPKYRLVQLSDCLSFASIIVYIWHEFYQKPDEMVVTIFAKGISKENLTVDFGEQILSVRINAPGEDAYVFQPRLFGKIIPSRCRYDVLSTKIEIRLVKAESIHWTSLEFTREITVAQRANVSSVTGTPKPTYPSSKPTRDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04597 377 PANTHER PROTEIN SGT1 HOMOLOG 1 375 IPR044563 GO:0051087
Seca9g04597 377 Pfam CS domain 179 254 IPR007052 -
Seca9g04597 377 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Seca9g04597 377 SMART tpr_5 36 69 IPR019734 GO:0005515
Seca9g04597 377 SMART tpr_5 70 103 IPR019734 GO:0005515
Seca9g04597 377 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca9g04597 377 ProSiteProfiles SGS domain profile. 287 377 IPR007699 -
Seca9g04597 377 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Seca9g04597 377 ProSiteProfiles CS domain profile. 175 264 IPR007052 -
Seca9g04597 377 Pfam Tetratricopeptide repeat 70 102 IPR019734 GO:0005515
Seca9g04597 377 Pfam Tetratricopeptide repeat 37 68 IPR019734 GO:0005515
Seca9g04597 377 SUPERFAMILY HSP20-like chaperones 175 271 IPR008978 -
Seca9g04597 377 CDD p23_CS_SGT1_like 181 264 - -
Seca9g04597 377 Gene3D - 178 266 IPR008978 -
Seca9g04597 377 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515
Seca9g04597 377 Pfam SGS domain 295 375 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04597 Seca-Chr9 127191177 127199733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04597 1 122 U-box Gene Family AT3G07370 25.410 8.93e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04597 K12795 - gmx:100780174 573.548