Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04570 ATGGATATACATAATCATGGCTTTATCCCTGTACATTTCAACAACCAAAAAGATCTAAAAACTGCCAACTCGGGCTATGAGTTGGATGACTCGGTCTCTATCACCGAAAATCCTGCTGCTACAACCATAGATTTGCAAAATGTGTGTTCTAATGATAAGGCAATTTTTATGGTGGATTCCGATGCCTCAAAAGAAATTAATCACACCATTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGGAAAATGTAGGAAAGCAAAAATATATTGCATCATTGCGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATATATAGAGGCACCATAAAAAAGGTAAATGGCAAACAAGGATTAGCGCAGTTACAGAAAAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAGGCATATGACATTGCAGCCATCAAGTTTCGAGGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATCGAATAGTGTTCTTCCAGTTGGTGGGGCTGCAAAACGAATGTGGATTTCTAAAGAATTAGAGAAGATAGCTCCTATGACTAGTGGTCAGCAACCTTACAGTACAAATGTAAGTAGTACTATTGATATCCCAACCATTAAGCCAGTTGCTGCTATACCAAATAATCCTGCAATAGCATTTTATCCCCCAAACCGTTTTCGCCGACTTCATCCTACCAATGATGGAAGTGGCACATTAGAGCCTTCTGGATCTACAACTAATGCAGCCACACTAATTGCAATGGCAAAAAGCGCTAGATTCTTTATATTGCCTCACATGTCCCATTGA 957 0.3918 MDIHNHGFIPVHFNNQKDLKTANSGYELDDSVSITENPAATTIDLQNVCSNDKAIFMVDSDASKEINHTIGKRTSIYRGVTSGYEKEEKAARAYDLASLKYWGLSATTNFPVSNYTKELEDMENVGKQKYIASLRRNSSGFTRGTSIYRGTIKKVNGKQGLAQLQKKDLYLGTFDSEDEAAEAYDIAAIKFRGANAITNFEMSRYDVEAISNSVLPVGGAAKRMWISKELEKIAPMTSGQQPYSTNVSSTIDIPTIKPVAAIPNNPAIAFYPPNRFRRLHPTNDGSGTLEPSGSTTNAATLIAMAKSARFFILPHMSH. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04570 318 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700|GO:0006355
Seca9g04570 318 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Seca9g04570 318 ProSiteProfiles AP2/ERF domain profile. 44 111 IPR001471 GO:0003700|GO:0006355
Seca9g04570 318 Gene3D AP2/ERF domain 62 113 IPR036955 GO:0003700|GO:0006355
Seca9g04570 318 Gene3D AP2/ERF domain 123 203 IPR036955 GO:0003700|GO:0006355
Seca9g04570 318 CDD AP2 146 203 IPR001471 GO:0003700|GO:0006355
Seca9g04570 318 SMART rav1_2 147 207 IPR001471 GO:0003700|GO:0006355
Seca9g04570 318 SMART rav1_2 76 117 IPR001471 GO:0003700|GO:0006355
Seca9g04570 318 SUPERFAMILY DNA-binding domain 83 113 IPR016177 GO:0003677
Seca9g04570 318 SUPERFAMILY DNA-binding domain 147 203 IPR016177 GO:0003677
Seca9g04570 318 ProSiteProfiles AP2/ERF domain profile. 147 201 IPR001471 GO:0003700|GO:0006355
Seca9g04570 318 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 52 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04570 Seca-Chr9 124839347 124842740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04570 19 231 AP2-EREBP Transcription Factor Family AT1G51190 45.600 4.09e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04570 K09285 - gmx:100777168 272.707