Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04569 ATGCCTAGAATGGAAGATTTCTTTGATATTCAAATAGAGACTCAAGATTTCTCTTTAGTGAACCAGATACATAATCATGGCTTTATCCCTGTACATTTCAAAAACCAACAAGATCTAAAAACTGCCAACTCGGGCTATAAGTTGGATGACTCGGTCTCTATCACCGAAACTCTTGCTGCTACAACCATAGATTTGCAAAATGTGACTTCTAATGATGAGGCAATTTTTATGGTGGATTTTGACGCCTCAAAAGAAATTAATCACACCATTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAAGCACATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCATGGTTTTGTACTCTGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCTTCTGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGAGTTGGAGTACATGCAAAATGTAGGAAAGCAAGAATATATTGCATCATTGCGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATATATAGAGGTGTTACAAGGCACCATAAAAAAGGTAAATGGCAAACAAGGATAAGCGCAGTTACAGGAAAAAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAAGCATATGACATTGCAACAATCAAGTTTCAAGGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATCGAATAGTGTTCTTCCAGTTGGTGGGGATGCAAAACGAATGTGGATTTCTAAAGAATTAGAGAAGATAGCTCCTATGACTAGTGGTCAGCAACCTTACAGTACAAATGTAAGTAGTACTATTGATATCTCAACCATTAAGCCAGTTGCTGCTATACCAAATAATCCTGCAATAACATTTTATCCCCCAAACCTTTTCCACCGACTTCATCCTACCAATGATGGAAGTGGCACATCAGAGCCTTCTAGAACTACAACTAATGCAGCCACACTAAATGCAATGGCAAAAAGAGCTAGATTCTTTATATTGCCTCACATGTCCTATTGA 1107 0.3866 MPRMEDFFDIQIETQDFSLVNQIHNHGFIPVHFKNQQDLKTANSGYKLDDSVSITETLAATTIDLQNVTSNDEAIFMVDFDASKEINHTIGKRTSIYRGVTRHRWTGRYEAHLWDNKCKQEGQAKKGRHGFVLCGYEKEEKAARASDLASLKYWGLSATTNFPELEYMQNVGKQEYIASLRRNSSGFTRGTSIYRGVTRHHKKGKWQTRISAVTGKKDLYLGTFDSEDEAAEAYDIATIKFQGANAITNFEMSRYDVEAISNSVLPVGGDAKRMWISKELEKIAPMTSGQQPYSTNVSSTIDISTIKPVAAIPNNPAITFYPPNLFHRLHPTNDGSGTSEPSRTTTNAATLNAMAKRARFFILPHMSY. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04569 368 CDD AP2 192 253 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 SUPERFAMILY DNA-binding domain 192 253 IPR016177 GO:0003677
Seca9g04569 368 Pfam AP2 domain 96 155 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 Pfam AP2 domain 193 241 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 SMART rav1_2 96 169 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 SMART rav1_2 193 257 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 PRINTS Ethylene responsive element binding protein signature 233 253 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 CDD AP2 95 165 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 ProSiteProfiles AP2/ERF domain profile. 193 251 IPR001471 GO:0003700|GO:0006355
Seca9g04569 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 62 287 - -
Seca9g04569 368 SUPERFAMILY DNA-binding domain 95 163 IPR016177 GO:0003677
Seca9g04569 368 Gene3D AP2/ERF domain 96 164 IPR036955 GO:0003700|GO:0006355
Seca9g04569 368 Gene3D AP2/ERF domain 193 253 IPR036955 GO:0003700|GO:0006355
Seca9g04569 368 ProSiteProfiles AP2/ERF domain profile. 96 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04569 Seca-Chr9 124728025 124730816 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04569 1 368 AP2-EREBP Transcription Factor Family AT5G65510 43.311 8.05e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca9g04569 AP2 1.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04569 K09285 - gmx:100795280 374.015