Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04567 ATGGAGTCTAATAATGAATTTCAACCATTCATGACAATGCCTAGAATGGATGATTTCTTAGATTTTCGAATAGAGACTCAAGATTTCTCTTCACTCAACCAGATACATAATCATGGCTTTATCCCTGTACATTTCAACAACCAACAAGATCTAAAAACAGCCAACTCGGGCTATGAGTTGGATGACTCGGTCTCTATCACCGAAACTCTTGCTGCTATAACCATAGATTTGCAAAATGTGTCTTCTAATGATAAGGCAATTTTTATGGTTGATTCTGATGCCTCAAAAGAAATTAATCACACCATTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAAGCAAATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCAAGGTGGATATGAAAAGGAAGAAAAGGTTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGACTTGGAGGACATGCAAAATGTAGGAAAGCAAGAATATATTGCATCATTGCGAAGATATGATGTGGAAGCTATATCAAATAGTGTTCTTCCAGTTGGTGGGGCTGCAAACCGAATGTGGATTTCTAAAGAAATAGAGAAGATAGCTCCTATGACTAGTGGTCAACAACCTTAA 705 0.3816 MESNNEFQPFMTMPRMDDFLDFRIETQDFSSLNQIHNHGFIPVHFNNQQDLKTANSGYELDDSVSITETLAAITIDLQNVSSNDKAIFMVDSDASKEINHTIGKRTSIYRGVTRHRWTGRYEANLWDNKCKQEGQAKKGRQGGYEKEEKVARAYDLASLKYWGLSATTNFPVSNYTKDLEDMQNVGKQEYIASLRRYDVEAISNSVLPVGGAANRMWISKEIEKIAPMTSGQQP. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04567 234 SUPERFAMILY DNA-binding domain 107 173 IPR016177 GO:0003677
Seca9g04567 234 CDD AP2 107 173 IPR001471 GO:0003700|GO:0006355
Seca9g04567 234 SMART rav1_2 108 177 IPR001471 GO:0003700|GO:0006355
Seca9g04567 234 Gene3D AP2/ERF domain 108 173 IPR036955 GO:0003700|GO:0006355
Seca9g04567 234 Pfam AP2 domain 108 163 IPR001471 GO:0003700|GO:0006355
Seca9g04567 234 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 196 - -
Seca9g04567 234 PRINTS Ethylene responsive element binding protein signature 153 173 IPR001471 GO:0003700|GO:0006355
Seca9g04567 234 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca9g04567 234 ProSiteProfiles AP2/ERF domain profile. 108 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04567 Seca-Chr9 124649068 124651126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04567 107 215 AP2-EREBP Transcription Factor Family AT5G65510 37.615 8.76e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca9g04567 AP2 1.4e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04567 K09285 - pop:7495544 211.46