Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04565 GGATATGAAAAGCAAGAAGAGGCTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCATCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTCGAGGACATGCAAAATGTAGGAAAGCAAGAATATATTGCATCATTGCGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATATATAGAGGTGTTTCAAGGCACCATAAAAAAGGTAAATGGCAAACAAGGATTAGCGCAGTTACAGGAAAAAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAGGCATATGACATTGCAATAATCAAGTTTCGAAGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATTGAATAGTTTTCTTCCAGTTGGTGGGGCTGCAAAACGAATGTGGAATTCTAAAGAATTAGAGAAGATAGCTCATATGACTAGTGGTCAGCAACCTTACAGTACAAATGTAAGTAGTACTATTGATATCTCAACCATTAAGCCAATTGCTGCTATACTAAATAATCCTGCAATAAAATTTTATCCCCAAACCTTTTCCACCGACTTCATCCTACCAATGATGGAAGTGGCACATCAGAGCCTTCTGGAACTACAACTAATGCAGCCAGACTAA 669 0.3797 GYEKQEEAARAYDLASLKYWGLSSTTNFPVSNYTKEFEDMQNVGKQEYIASLRRNSSGFTRGTSIYRGVSRHHKKGKWQTRISAVTGKKDLYLGTFDSEDEAAEAYDIAIIKFRSANAITNFEMSRYDVEAILNSFLPVGGAAKRMWNSKELEKIAHMTSGQQPYSTNVSSTIDISTIKPIAAILNNPAIKFYPQTFSTDFILPMMEVAHQSLLELQLMQPD. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04565 222 SUPERFAMILY DNA-binding domain 2 31 IPR016177 GO:0003677
Seca9g04565 222 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Seca9g04565 222 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Seca9g04565 222 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 159 - -
Seca9g04565 222 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Seca9g04565 222 Gene3D AP2/ERF domain 1 31 IPR036955 GO:0003700|GO:0006355
Seca9g04565 222 ProSiteProfiles AP2/ERF domain profile. 1 29 IPR001471 GO:0003700|GO:0006355
Seca9g04565 222 SUPERFAMILY DNA-binding domain 64 125 IPR016177 GO:0003677
Seca9g04565 222 Pfam AP2 domain 65 114 IPR001471 GO:0003700|GO:0006355
Seca9g04565 222 CDD AP2 64 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04565 Seca-Chr9 124365510 124367113 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04565 1 153 AP2-EREBP Transcription Factor Family AT1G51190 66.452 2.27e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g04565 AP2 3.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04565 K09285 - gmx:100795280 254.988