Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04563 ATGGAAGATTTCTTAGATTTTCAAATAGAGACTCAAGATTTCTCTTCACTCAACCAGATACATAATCATGGCTTTATCCCTGTACATTTCAACAACCAACAAGATCTAAAAACTTCCAACTCGGGCTATGAGTCGGATGACTCGGTCTCTATCACCGAAACTCTTGCTGCTACAACCATAGATTTGCAAAATGTGTCTTCTAATGATAAGGCAATTTTTATGGTGGAATCCGATGCCTCAAAAGAAATTAATCACACCATTGGAAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACCGGTAGATATGAAGACAATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCAAGGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTACCTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAATCAAGAATATATTGCATCATTGCGAAGGAATAACAGTGGCTTTACAAGGGGAACTTCCATGTATAGAGGTGTTACAAGGCACCATAAAAAAGGTAAACAGCAAACAAGGATTAGCGCAGTTACAGAAAAAAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAGGCATATGACATTGCAGCCATCAAGTTTCGAGGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGAAAGCTATGTCTAATAGTATTCTTCCAGTTGGTGGTGCTGCAAAATGA 816 0.3873 MEDFLDFQIETQDFSSLNQIHNHGFIPVHFNNQQDLKTSNSGYESDDSVSITETLAATTIDLQNVSSNDKAIFMVESDASKEINHTIGKRTSIYRGVTRHRWTGRYEDNLWDNKCKQEGQAKKGRQGGYEKEEKAARAYDLASLKYWGLSATTTFPVSNYTKELEDMQNVGNQEYIASLRRNNSGFTRGTSMYRGVTRHHKKGKQQTRISAVTEKKDLYLGTFDSEDEAAEAYDIAAIKFRGANAITNFEMSRYDVKAMSNSILPVGGAAK. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04563 271 Pfam AP2 domain 193 242 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 Pfam AP2 domain 93 148 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 SUPERFAMILY DNA-binding domain 92 158 IPR016177 GO:0003677
Seca9g04563 271 Gene3D AP2/ERF domain 192 252 IPR036955 GO:0003700|GO:0006355
Seca9g04563 271 Gene3D AP2/ERF domain 93 158 IPR036955 GO:0003700|GO:0006355
Seca9g04563 271 SUPERFAMILY DNA-binding domain 191 252 IPR016177 GO:0003677
Seca9g04563 271 PRINTS Ethylene responsive element binding protein signature 232 252 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 CDD AP2 191 252 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 SMART rav1_2 192 256 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 SMART rav1_2 93 162 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 ProSiteProfiles AP2/ERF domain profile. 192 250 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 CDD AP2 92 158 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 ProSiteProfiles AP2/ERF domain profile. 93 156 IPR001471 GO:0003700|GO:0006355
Seca9g04563 271 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04563 Seca-Chr9 124267876 124270496 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04563 36 270 AP2-EREBP Transcription Factor Family AT1G51190 58.159 2.22e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca9g04563 AP2 1.4e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04563 K09285 - qsu:112018242 328.946