Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04558 ATGGAGTCTAATAATGAATTTCAACCATTCATGACAACGCCTAGAATGGATGATTTCTTAGATTTTCAAATAGAGACTCAAGATTTCTCTTCATTCAACCAGATACATAATCATGGCTTTATCCCAGTACATTTCAACAACCAACAAGATCTAAAAACAGCCAACTCGGGCTATGAGTTGGATGACTCGGTCTCTATCACCGAAACTCTTGCTGCTACAACCATAGATTTGCAAAATGTGTCTTCTAATGATAAGGCAATTTTTATGGTGGATTCCGATGCCTCAAAAGAAATTAATCACACCATTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAAGCAAATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCAAGGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAGCAAGAATATATTGCATCATTGCGAAGGAAAAGCAGTGGCTTTACAAGGGGAACTTCCATATATAGAGGTGTTACAAGGGACCATAAAAAAGGTAAATGGCAAACAAGAATTAGCGCAGTTACAGGAAAAAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAGGCATATGATATTGCAACCATCAAGTTTCGAGGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATCAAATAGTGTTCTTCCAGTTGGTGGGGCTGCAAAACGAATGTGGATTTCTAAAGAAATAGAGAAGATAGCTCCTACGACTAGTGGTCAGCAACCTTACAGTACAAATGTAAGTAGTACTATTGATATCCCAACCATTAAGCCGGTTTCTGCTATACCAAATAATCCTGCAATAGCATTTTATCCCCCAAACCTTTTCCACCGACTTCATCCTACCAATGATGGAAGTGGCACATCAGAGCCTTCTGGAACTACAACTAATGCGGCCACACTAAATGCAATGGCAAAAAGAGCTAGATTCTTTATATTGCCTCACATGTCCTATTGA 1149 0.3899 MESNNEFQPFMTTPRMDDFLDFQIETQDFSSFNQIHNHGFIPVHFNNQQDLKTANSGYELDDSVSITETLAATTIDLQNVSSNDKAIFMVDSDASKEINHTIGKRTSIYRGVTRHRWTGRYEANLWDNKCKQEGQAKKGRQGGYEKEEKAARAYDLASLKYWGLSATTNFPVSNYTKELEDMQNVGKQEYIASLRRKSSGFTRGTSIYRGVTRDHKKGKWQTRISAVTGKKDLYLGTFDSEDEAAEAYDIATIKFRGANAITNFEMSRYDVEAISNSVLPVGGAAKRMWISKEIEKIAPTTSGQQPYSTNVSSTIDIPTIKPVSAIPNNPAIAFYPPNLFHRLHPTNDGSGTSEPSGTTTNAATLNAMAKRARFFILPHMSY. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04558 382 Gene3D AP2/ERF domain 207 267 IPR036955 GO:0003700|GO:0006355
Seca9g04558 382 Gene3D AP2/ERF domain 108 173 IPR036955 GO:0003700|GO:0006355
Seca9g04558 382 CDD AP2 206 267 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 ProSiteProfiles AP2/ERF domain profile. 108 171 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 CDD AP2 107 173 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 Pfam AP2 domain 108 163 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 Pfam AP2 domain 207 257 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 ProSiteProfiles AP2/ERF domain profile. 207 265 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 SUPERFAMILY DNA-binding domain 206 267 IPR016177 GO:0003677
Seca9g04558 382 SUPERFAMILY DNA-binding domain 107 173 IPR016177 GO:0003677
Seca9g04558 382 SMART rav1_2 108 177 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 SMART rav1_2 207 271 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 74 298 - -
Seca9g04558 382 PRINTS Ethylene responsive element binding protein signature 247 267 IPR001471 GO:0003700|GO:0006355
Seca9g04558 382 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04558 Seca-Chr9 124067761 124070716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04558 14 382 AP2-EREBP Transcription Factor Family AT5G65510 46.014 1.58e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca9g04558 AP2 1.9e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04558 K09285 - tcc:18611451 403.675