Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04555 ATGGAGTCTAATAATGAATTTCAACCATTCATGACAACGCCTAGAATGGATGATTTCTTAGATTTTCAAATAGAGACTCAAGATTTCTCTTCACTCAACCAGATACATAATCATGGCTTTATCCCAGTACATTTCAACAACCAACAAGATCTAAAAACAGCCAACTCGGGCTATGAGTTGGATGACTCGGTCTCTATCACCGAAACTCTTGTTGCTACAACCATAGATTTGCAAAATGTGTCTTCTAATGATAAGGCAATTTTTATGGTGGATTCCAATGCCTCAAAAGAAATTAATCACACCATTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAAGCAAATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCAAGGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTTTCGAATTACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAGCAAGAATATATTGCTTCATTGCGAAGGAATAGCAGTGGCTTTACAAGGGTAACTTCCATATATAGAGGTGTTACAAGGGACCATAAAAAAGGTAAATGGCAAACAAGGATTAGCGCAGTTACACGAAAAAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAGGCATATGATATTGCAGCCATCAAGTTTCGAGGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATCAAATAGTGTTCTTCCAGTTGGTGGGGCTGCAAAACGAATGTGGATTTCTAAAGAAATAGAGAAGATAGCTCCTATGACTAGTGGTCAGCAACCTTATAGTACAAATGTAAGTAGTACTATTGATATCCCAACCATTAAGCCGGTTTCTGCTATACCAAATAATCCTGCAATAGCATTTTATCCCCCAAACCTTTTCCACCGACTTCATCCTACCAATGATGGAAGTGGCACATCAGAGCCTTCTGGAACTACAACTAATGCAGCCACACTAAATGCAATGGCAAAAAGAGCTAGATTCTTTATATTGCCTCACATGTCCTATTGA 1113 0.3854 MESNNEFQPFMTTPRMDDFLDFQIETQDFSSLNQIHNHGFIPVHFNNQQDLKTANSGYELDDSVSITETLVATTIDLQNVSSNDKAIFMVDSNASKEINHTIGKRTSIYRGVTRHRWTGRYEANLWDNKCKQEGQAKKGRQGGYEKEEKAARAYDLASLKFRITKELEDMQNVGKQEYIASLRRNSSGFTRVTSIYRGVTRDHKKGKWQTRISAVTRKKDLYLGTFDSEDEAAEAYDIAAIKFRGANAITNFEMSRYDVEAISNSVLPVGGAAKRMWISKEIEKIAPMTSGQQPYSTNVSSTIDIPTIKPVSAIPNNPAIAFYPPNLFHRLHPTNDGSGTSEPSGTTTNAATLNAMAKRARFFILPHMSY. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04555 370 CDD AP2 194 255 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 SUPERFAMILY DNA-binding domain 107 162 IPR016177 GO:0003677
Seca9g04555 370 SUPERFAMILY DNA-binding domain 194 255 IPR016177 GO:0003677
Seca9g04555 370 CDD AP2 107 162 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 Pfam AP2 domain 195 245 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 Pfam AP2 domain 108 161 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 ProSiteProfiles AP2/ERF domain profile. 195 253 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 74 284 - -
Seca9g04555 370 SMART rav1_2 195 259 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 SMART rav1_2 108 177 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 PRINTS Ethylene responsive element binding protein signature 235 255 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 ProSiteProfiles AP2/ERF domain profile. 108 171 IPR001471 GO:0003700|GO:0006355
Seca9g04555 370 Gene3D AP2/ERF domain 195 255 IPR036955 GO:0003700|GO:0006355
Seca9g04555 370 Gene3D AP2/ERF domain 108 168 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04555 Seca-Chr9 123994009 123996962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04555 14 370 AP2-EREBP Transcription Factor Family AT5G65510 42.825 3.91e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca9g04555 AP2 1.1e-06 CL0081