LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g04552	ATGGAGTCTAATAATGAATTTCAACCATTCATGACAATGCCTAGAATGGAAGATTTCTTAGATTTTCAAATAGAGACTCAAGATTTCTCTTCACTCAACCAGATACATAATCATGGCTTTATCTCTGTACATTTCAACAACCAACAAGATCTAAAAACTGCCAACTCGGGCTATGAGTTGGATGACTCGGTCTCTATCACCAAAACTCTTGTTGCTACAACCATAGATTTGCAAAATGTGTCTTCTAATGATAAGGCAATTTTTATAGTGGAATCCGATGCCTCAAAAGAAATTAATCACACCATTGGAAAAAGGACTTCTATTTACGGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAAGACAATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCAAGGTGGATATGAAAAGGAAGAAAAGGCTACAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAGCAAGAATATATTGCATCATTGCGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATGTATAGAGGTGTTACAAGGAACCATAAAAAAGTTAAACGGCAAAGAAGGATTAGCGTAGTTACAGGAAAGAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAGGCATATGACATTGTAGCCATCAAGTTTTGA	768	0.3789	MESNNEFQPFMTMPRMEDFLDFQIETQDFSSLNQIHNHGFISVHFNNQQDLKTANSGYELDDSVSITKTLVATTIDLQNVSSNDKAIFIVESDASKEINHTIGKRTSIYGGVTRHRWTGRYEDNLWDNKCKQEGQAKKGRQGGYEKEEKATRAYDLASLKYWGLSATTNFPVSNYTKELEDMQNVGKQEYIASLRRNSSGFTRGTSMYRGVTRNHKKVKRQRRISVVTGKKDLYLGTFDSEDEAAEAYDIVAIKF.	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g04552	255	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	60	255	-	-
	Seca9g04552	255	ProSiteProfiles	AP2/ERF domain profile.	207	255	IPR001471	GO:0003700\|GO:0006355
	Seca9g04552	255	CDD	AP2	107	173	IPR001471	GO:0003700\|GO:0006355
	Seca9g04552	255	SUPERFAMILY	DNA-binding domain	206	254	IPR016177	GO:0003677
	Seca9g04552	255	Gene3D	AP2/ERF domain	207	255	IPR036955	GO:0003700\|GO:0006355
	Seca9g04552	255	Gene3D	AP2/ERF domain	108	173	IPR036955	GO:0003700\|GO:0006355
	Seca9g04552	255	SMART	rav1_2	108	177	IPR001471	GO:0003700\|GO:0006355
	Seca9g04552	255	SMART	rav1_2	207	255	IPR001471	GO:0003700\|GO:0006355
	Seca9g04552	255	SUPERFAMILY	DNA-binding domain	107	173	IPR016177	GO:0003677
	Seca9g04552	255	CDD	AP2	206	255	IPR001471	GO:0003700\|GO:0006355
	Seca9g04552	255	ProSiteProfiles	AP2/ERF domain profile.	108	171	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g04552	Seca-Chr9	123799343	123801913	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g04552	51	255	AP2-EREBP Transcription Factor Family	AT1G51190	56.731	2.50e-80	250

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g04552	K09285		-	qsu:112018242	288.5