Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04547 ATGGAGTCTAATAATGAATTTCAACCATTCATGACAATGCCTAGAATGGAAGATTTCTTAGATTCTCAAATAGAGACTCAAGATTTCTCTTCACTCAACCAGATACATAATCATGGCTTTATCCCTGTGCATTTCAACAACCAACAAGATCTAAAAACTGCCAACTCGGGCTATGAGTTGGATGACTCGGTCTCTATCACCGAAACTCTTGTTGCTACAACCATAGATTTGCAAAATGTGTCTTCTAATGATAAGGCAATTTTTATGGTGGAATCTGATGCCTCAAAAGAAATTAATCACACCATTGGAAAAATGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAAGACAATCTGTGGGATAATAAGTGCAAACAACAGGGTCAAGCAAAGAAAGGGCGTCAAGGGTTGTCAACTGGCTTTCTTATTATTCCTCTAGTTGGATATGAAAAGGAAGAAAAGACTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAGCAAGAATATATTGAATCATTGCGAAGGAATAGCAGTGGCTTTACAAAGGGAACTTCCATGTATAGAGGTGTTACAAGGAACCATAAAAAAGTTAAACGGCAAAGAAGGATTAGCGCAGTTACAGGAAAGAAAGATCTATACTTGGGAACATTTGATAGTGAAGATGAAGGAGCAGAGGCATATGACATTGCAGCCATCAAGTTTCGAGGTGCAAATGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATGTCTAATAGTGTTCTTCCAGTTGGTGGTGCTGCAAAATGA 894 0.3814 MESNNEFQPFMTMPRMEDFLDSQIETQDFSSLNQIHNHGFIPVHFNNQQDLKTANSGYELDDSVSITETLVATTIDLQNVSSNDKAIFMVESDASKEINHTIGKMTSIYRGVTRHRWTGRYEDNLWDNKCKQQGQAKKGRQGLSTGFLIIPLVGYEKEEKTARAYDLASLKYWGLSATTNFPVSNYTKELEDMQNVGKQEYIESLRRNSSGFTKGTSMYRGVTRNHKKVKRQRRISAVTGKKDLYLGTFDSEDEGAEAYDIAAIKFRGANAITNFEMSRYDVEAMSNSVLPVGGAAK. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04547 297 SUPERFAMILY DNA-binding domain 217 278 IPR016177 GO:0003677
Seca9g04547 297 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 290 - -
Seca9g04547 297 SUPERFAMILY DNA-binding domain 107 184 IPR016177 GO:0003677
Seca9g04547 297 CDD AP2 107 184 IPR001471 GO:0003700|GO:0006355
Seca9g04547 297 CDD AP2 217 278 IPR001471 GO:0003700|GO:0006355
Seca9g04547 297 Gene3D AP2/ERF domain 218 278 IPR036955 GO:0003700|GO:0006355
Seca9g04547 297 Gene3D AP2/ERF domain 108 184 IPR036955 GO:0003700|GO:0006355
Seca9g04547 297 ProSiteProfiles AP2/ERF domain profile. 108 182 IPR001471 GO:0003700|GO:0006355
Seca9g04547 297 PRINTS Ethylene responsive element binding protein signature 164 184 IPR001471 GO:0003700|GO:0006355
Seca9g04547 297 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca9g04547 297 ProSiteProfiles AP2/ERF domain profile. 218 276 IPR001471 GO:0003700|GO:0006355
Seca9g04547 297 SMART rav1_2 108 188 IPR001471 GO:0003700|GO:0006355
Seca9g04547 297 SMART rav1_2 218 282 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04547 Seca-Chr9 122395434 122398098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04547 13 296 AP2-EREBP Transcription Factor Family AT5G65510 49.711 1.03e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04547 K09285 - qsu:112018242 326.25