Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04546 ATGAGCGATGAAAGATCAAAGGGATGGAACATATACATAGGTTCAGAAGGACAAGGAGATGAGGAAGGTCCGTGGAAAAGCATTGGGACATCAATGAGTGCCATTTCATTTGGTTTTGTTGCCACAACCATTTTGATTTCAATGTGTTTAATGAAAACACCTGCTGAATGGTGTTTTTTGTGGCTCGGTGGTTTTCGGTCATCTGAACTCCTCAAGATTGGAACAAGGATCGAATTGGATTTACTTGTGGTCCATGTGTTTTCATTTAAGAAAATACCCAATGTGTTTACAAGGAAATATGGAGGTGATCTGTCAAATCCAGTGTTTGTCAAGCCTCCTGATGGCATTGAATGGAGAATAGAGTGGACAAAACAAAATGGTGGATATGCAAAGGAAGAAAAGGTTTCCAATCATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAACAAGAATATATTGCATCATTGCGAAGGAATAGCAGTGGCTTTACAATGGGAACTTCCATATATAGAGGTGTTGCGAGGCACCATAAAAAAGGTAAATGGCAAACAAGGATTAGCACAGTTACAGGAAAAAAAGATCTATACTTAGGAACATTTGGCAAGACTGAGCTTAGACTAACGAGAACCGCCGTTCCCGAAGGCCGGATTAACTTACCTAAAACCATTCCCAAGGCCATGAAGACCTTAACCTTTACCAAGGGCCAAAGACCCCAATCATGTCTTTATTCATCAAAATCATAA 747 0.4003 MSDERSKGWNIYIGSEGQGDEEGPWKSIGTSMSAISFGFVATTILISMCLMKTPAEWCFLWLGGFRSSELLKIGTRIELDLLVVHVFSFKKIPNVFTRKYGGDLSNPVFVKPPDGIEWRIEWTKQNGGYAKEEKVSNHTKELEDMQNVGKQEYIASLRRNSSGFTMGTSIYRGVARHHKKGKWQTRISTVTGKKDLYLGTFGKTELRLTRTAVPEGRINLPKTIPKAMKTLTFTKGQRPQSCLYSSKS. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04546 248 Gene3D AP2/ERF domain 170 206 IPR036955 GO:0003700|GO:0006355
Seca9g04546 248 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 135 204 - -
Seca9g04546 248 SMART rav1_2 170 227 IPR001471 GO:0003700|GO:0006355
Seca9g04546 248 SUPERFAMILY DNA-binding domain 169 205 IPR016177 GO:0003677
Seca9g04546 248 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04546 Seca-Chr9 122336818 122341404 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04546 137 205 AP2-EREBP Transcription Factor Family AT4G37750 65.217 1.49e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca9g04546 AP2 0.00025 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04546 K09285 - ming:122073212 108.997