Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04540 ATGTTTTTTATAGGCAACGATGGACAGGTAGATATGAAGACAATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCATCAAGGGGTTAGGGGATACTATGCCTAAGTGTACTAATTGTGATGGTGGATATGAAAAGGAAGAAAAGGCTACAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAGCAAGAATATATTGCATCATTGCGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATGTATCGAGGTGTTACAAGGCACCATAAAAAAGGTAAACGACAAACAAGGATTAGTGCAGTTACAGGAAAAAAAGATATATACTTGGGAACATTTGATAGTGAAGATGAAGCAGCAGAGGGATATGACATTGTAGCCATCAAGTTTCGAGGTGCAAACGTTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATGTCTAATTTAAATCTATATCTTTAA 558 0.3763 MFFIGNDGQVDMKTICGIISANKRVKQRKGIKGLGDTMPKCTNCDGGYEKEEKATRAYDLASLKYWGLSATTNFPVSNYTKELEDMQNVGKQEYIASLRRNSSGFTRGTSMYRGVTRHHKKGKRQTRISAVTGKKDIYLGTFDSEDEAAEGYDIVAIKFRGANVITNFEMSRYDVEAMSNLNLYL. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04540 185 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 43 178 - -
Seca9g04540 185 ProSiteProfiles AP2/ERF domain profile. 46 75 IPR001471 GO:0003700|GO:0006355
Seca9g04540 185 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Seca9g04540 185 SMART rav1_2 32 81 IPR001471 GO:0003700|GO:0006355
Seca9g04540 185 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Seca9g04540 185 SUPERFAMILY DNA-binding domain 43 77 IPR016177 GO:0003677
Seca9g04540 185 SUPERFAMILY DNA-binding domain 110 171 IPR016177 GO:0003677
Seca9g04540 185 CDD AP2 110 171 IPR001471 GO:0003700|GO:0006355
Seca9g04540 185 Gene3D AP2/ERF domain 111 171 IPR036955 GO:0003700|GO:0006355
Seca9g04540 185 Gene3D AP2/ERF domain 21 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04540 Seca-Chr9 121466437 121468546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04540 46 183 AP2-EREBP Transcription Factor Family AT5G57390 65.217 3.65e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g04540 AP2 9e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04540 K09285 - mof:131153539 216.083