Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04523 ATGGCTGGAACGTACGATTTGGTGAAGGACGTTTTCCCAGGAAAGCAAACATGGAGGCTGAAGGTAAGGATCGTTCGGATTTGGGAGATGTGCCCAATAGATCAGCCAGGAAATCCATTTGCTATTGAGATGGTCATGATGGATGCTGAGATGGCTTTCTTCGGGGTTGTGAGGAACACTGGTTCATATCGTGCATGTCGTCATGAATATAAGCTGGTTTTCCATGCGAAAACTAGGGTTGTTAACTGTGATGGCCTTCCAATCCCGTTTTATGGGCTTTCCTTGATGAGCACTGATGAAATTATTGGCACACAGGGCCGGTGTGACTACCTGATTGATATGATGGGATTGTTGATTGCTGCCTCTTCTGAGAAGATGTCTGAGAGGGGTGGTCGCATGACAAGGTTTATCATTTTGGAACTGGCGGACCGCAGGGGCAAGGTTAATTGCACTTTCTTTGGAGATTATGTCGACGTAGTGAACGGTTACCTTACCAGGGAGAGTGAAGAGCTTCCCGTTGTCGTGGTTCAGTACGCTAGGGTGAAGGCTTACAAGGGGGTGGTGTCCATCCAGAATGTGATGAGCACGACAACTATCATGTGGAATCCTGACATTCCCAAGGCCATTGAGTTTAAAAGGAGCTTGGCAGAACATGGATTTGAAACTGAGGCTGCGATTGGGGCGATTGGAGAAGGACACAATGAACTCAGTTTGAAGGATGACTTCCTTGGTTTTTATCCTAGGAAAACGATTAATGAGCTGCACATGACAGAGGAGGAGGGAAATTTTATAGTCATTGCAACGGTGGCTTCCATACTTGGTGATGATGCATGGTGGTATTCTGCGTGCTCGTGTCTGAAAGCTGTAAATGAAGAGGATGGGGTTTTCTTCTGCCCAATGTGCAAAGCTAATGTTAAGGAAGTTACACCGAGGTTCAAGCTGAAGATTGAGGTCTTTGATGAGGATGACACGGCTGCTTTCATACTATTTGACCAAGATGCCCAGTCTCTGCTCGGGAAGTCATGTGCTGAATTTGTCGAAGAGGCAAAGGACCCTGAATTTGGTGAGATTCCTGATGAGTTTCAAGTCTTGGTTGGCAAGGAAATGCTTTTCAAGGTTGACAAAGGTCCTGAGTATGCCTTTAGGTTTGATGACACTTTTAGGGTGAGGAGGATTTGTGTAGATGCTGAGATCATGGAAAAATTCAAAGAGTATGGTCTAATTACCACCCCTGAGAAGAATAAATTTATGCCACCATTCCCCACTCTTGGTGATGCGAGTTCAAGTGGAACTGTAAAAGGGGACGACAAGGAGGTTGTGGATTTGTGTGGGGAGGTGCATATGGTTTCAGGAGGTGAGATTAAGGGAGGCAGCGGTGGCGCTATCGGTGAGACTGAAGGGAAATCTAAAGCTGAATCATTCGTCGCAGTAGACCCTGTTGTTGTCCCTTCTGCCATGACTGATGTGGTGGACTTGGAGAGTCAGGGATATGGTGATGTGACCGCAGGGCAAAGTGAGAAACCTTTGGTGGATGAATTTAACCTTAAAAAAAAGAAGAACATGAGACTCAAGAAGGTTAAGGTCGAGCGTGAATGA 1596 0.4612 MAGTYDLVKDVFPGKQTWRLKVRIVRIWEMCPIDQPGNPFAIEMVMMDAEMAFFGVVRNTGSYRACRHEYKLVFHAKTRVVNCDGLPIPFYGLSLMSTDEIIGTQGRCDYLIDMMGLLIAASSEKMSERGGRMTRFIILELADRRGKVNCTFFGDYVDVVNGYLTRESEELPVVVVQYARVKAYKGVVSIQNVMSTTTIMWNPDIPKAIEFKRSLAEHGFETEAAIGAIGEGHNELSLKDDFLGFYPRKTINELHMTEEEGNFIVIATVASILGDDAWWYSACSCLKAVNEEDGVFFCPMCKANVKEVTPRFKLKIEVFDEDDTAAFILFDQDAQSLLGKSCAEFVEEAKDPEFGEIPDEFQVLVGKEMLFKVDKGPEYAFRFDDTFRVRRICVDAEIMEKFKEYGLITTPEKNKFMPPFPTLGDASSSGTVKGDDKEVVDLCGEVHMVSGGEIKGGSGGAIGETEGKSKAESFVAVDPVVVPSAMTDVVDLESQGYGDVTAGQSEKPLVDEFNLKKKKNMRLKKVKVERE. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04523 531 SUPERFAMILY Nucleic acid-binding proteins 245 403 IPR012340 -
Seca9g04523 531 Gene3D - 244 405 IPR012340 -
Seca9g04523 531 CDD RPA1_DBD_C 249 373 IPR047192 -
Seca9g04523 531 CDD RPA1_DBD_B_like 113 215 - -
Seca9g04523 531 PANTHER OS03G0429900 PROTEIN 7 374 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g04523 531 Gene3D - 87 224 IPR012340 -
Seca9g04523 531 Pfam Replication factor-A C terminal domain 263 394 IPR013955 -
Seca9g04523 531 SUPERFAMILY Nucleic acid-binding proteins 94 219 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04523 Seca-Chr9 119602219 119605983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04523 63 363 Core DNA Replication Machinery Family AT5G08020 24.762 1.07e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04523 - - lja:Lj6g3v0884310.1 363.229