Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04502 ATGTCATGTTCCCAACCTGAATTTGAGCAACAAAGAGAAGCTGAAAAGAAGATGGAGAATTTTTGGAGTATAATTTGTGGGGATTCTTGCTGTTCTGAGACTGCAGGAGGAAAGCCTTACTGTTATGATTTCAAGCTTTTAAGAGACCCTTCCTCATGCATCAATCATTTGTTCATCATTTGCTTTGATGTGTTACTGCTGATCCTGCTGTCATTCATTATGATCTTCAAGCCTTCATTGAGACCATTTTGGAGTCAGACAAGATATTCAAAGTTGCAGCTTGTATCTGCCATAACCAATGGCTCTCTTGGGTTGTTGCATTTGTGCTTAGGAATTTGGATTTTAGAGGAGAATTTAAGGAAAACTCACAAAGCTTTTCCTCTTAATTGGTGGTTGTTAGAACTCTTTCAGGGTTTCACATGGTTGTTAGTAGGCTTAACTCTAAGTCTTTATCAGAAACAACTTCCAAAAGCATGTTTGTGGTTGCTTTCTATTCTTGTATTCTCTGCTTCTGCTGTTTTTTGTGCTTTATCAATGTCTTATGCAATTAGCAACAGAGACTTGTCTCTTAAGGCAGTTTTAGATGTTGTATCTTTTCCAGGAGCAATTTTACTGCTCTTGTGCACATACAATGCAAGTAAATTTGAAAACACTAATGATAGAGATGAAATTGATGAAAGCCTTCATGCCCCTTTAAATAGCCAGTTCAATGAAGTTGATCCTATTACCCCATTTGCTAAAGCTGGATTCTTGAGTAAGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCAAAGCTACAGGATTCTGACAGAGCAGAAAGTTGTTATTCATCATTTGTAGAACAGTTGGATAGACAAAGACAAACAGAACCATTATCACAGTCAACAGTTTTATGGACAATAGTTTTGTGCCACCAGAGGGAGATTTTGATATCAGGATTGTTTGCTTTGCTCAAGGTACTCACTCTATCTTCTGGTCCTCTATTTCTGAATGGCTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTTTTCTTTATAAAGATCATTGAATCCTTATCACAAAGGCAGTGGTATTTCCGCAGTAGACTTGTTGGTATGAAGGTTAAGTCACTAATTACTGCAGCCATCTATAAAAAGACATTAAGATTATCCAATGGTGCTAGATTGATTCACTCTGGTGGTGAGATAATGAATTATGTGACTGTTGATGCTTATAGGATTGGAGAATTTCCATATTGGTTTCACCAGACATGGACAACAATCCTCCAACTATGTATTGCACTTGTAATTCTTTTCCATGCTGTTGGATTGGCAACAATTGCATCATTGGTGGTCATAGTTCTCACTGTGCTTTGCAACACTCCAATAGCAAAGTTACAACACAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGACTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTGCTGAAGCTATATGCATGGGAAATTCATTTTAAAAATTCTATAGAGAAGTTAAGGAATTTGGAACTAAAATTGTTATCTGCAGTGCAATTTAGTAAGGCATATAACATCTTTCTCTTTTGGATATCGCCTATGTTGGTCTCAACTGCTTCATTTGTGGCATGCTACTTCCTGAAAATTCCATTACATGCAAACAATGTTTTCACTTTTGTAGCTACTTTGCGCCTTGTGCAAGACCCAATTACTGCTGTCCCGGAAGTTATTGGGGCAGTCATTCAGGCAAAAGTTGCTTTTGCCCGGATTGTTAAATTCCTTGAGGCACCAGAACTGCAGAGTGCAGATTTCAGGAAGAGGTGCTATAATGACAATCTCAGAGGTTCAATTTTGATAAAAAATGCTGACTTTTCATGGGAAAGTAATGTTTCAAAGCCAACACTGAGGAATATAAATTTGGAGGTTAGGCATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACTCTCTTAGCAACAATTCTTGGAGAAGTTCCTAATACAAAGGGAACTATTGATGTTCATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATACGGGAAAATATTTTGTTTGGATCTTATTTGGATGTTCAAAGGTATCAAGAAACACTTCATAGATGTTCACTAATGGAGGACCTTGAGTTGCTTCCCCATGGAGACCTCACTGAAATAGGTGAGAGAGGAGTCACTCTAAGTGGAGGTCAGAAGCAGAGAATCCAACTTGCTCGTGCTCTATATCAAAATGCTGATATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACACACTGCCACAAGTTTGTTTAATGAATACATCATGGAAGGACTTAAAGGAAAAACTCTCTTACTCGTGACTCATCAAGTTGACTTTCTCCCAGCGTTTGATTTTGTTTTGTTGATGTCAGATGGGGAAATCCTACAAGCTGCTCCTTATCACCATCTATTGACCACAAGTCGAGAATTCCAAGACCTCATCAATGCTCACAAAGACATTGCTGGTTCTGACCACCTTGTGAATGTTATTAATTCTTACCAGAGACACCCAACTTCTAGAGAGATTATACAAGATTTCAAGGAGAATCAGCTTAAAACAACAAATGGAAATCAATTAATTAAGCAAGAAGAGAGAGAGATAGGAGACATTGGATTGAAGCCTTACTTACAATATATGAATCAGATGAAAGGCTATATATACTTCTTTGTTGCTTCCCTTTGTCACCTAATATTTTTCATTTGTCAGATATTGCAAAACACATGGATGGCAGCAAATGTTGACAATCACCATGTCAGCACATTGCAATTGATTGAAGTTTACTTCCTGATTGGAGCTATTTCAACAATTTTCTTGTTGATCAGAAGTCTACTTGTAGTTGCTTTGGGTCTTCAATCATCAAAGCATTTATTTTTATTGTTAATGAACTCCCTTTTTCATGCACCCATGTCTTTTTATGACTCTACCCCATTGGGAAGGATACTTAGTAGGGTCTCATCAGATTTGGGCATTATGGATCTTGATATCCCATTTACCCTCACTATTGCTGTGGGAAGCACTATAAATTTTTATGCTATTCTTATAGTTTTAGAAGTCTTCACTTGGCAAGTCTTGGTTGTCTCTATACCAATGGTTTACATTGCAATTCGCTTGCAGAGATATTACTTTTCCTCTGCAAAAGAAGTGATGCGGATGAATGGCACAACTAAGTCCTTTGTAGCTAATCATGTAGCTGAAACCGTTGCTGGAGCAGTGACAATTAGGGCTTTTGAGGAGGAAGAACGTTTTTTTGAGAAGAATCTTGATCTAATTGATATAAATGCTAGTGCTTTTTTCCATAGCTTTTCCTCAAATGAGTGGTTGATAGAACGGTTAGAAACAATTGGTGCAGTTATTCTTGCCTCTGCAGCATTTTGCATGGTTATGCTTCCACCTGGGACATTCAACTCTGGATTTATTGGCATGGCTCTGACTTATGGCCTTTCACTAAATGTTGCATTAGTATATTCAATTCAAAGTCAATGTGCTCTTACAAATCATATAGTATCTGTAGAGAGGCTAAGTCAATATATGCATATACAAAGTGAGGCCCAAGAAGTAGTAGAAGGAAATCGTCCACCTTTGAATTGGCCAGTTGCAGGAGAAGTAGAAATAAATGACTTGCAGATTCGGTACACACCTGATGGACCACTTGTACTTCATGGGATCACATGCACATTTGAAGCAGGACACAAGATTGGGATTGTTGGCAGAACAGGTAGTGGGAAATCCACTCTTATAGGTGCTTTATTTCGTCTTGTGGAGCCAGCAGGAGGGAAGATTATAATTGATGACATAGATATCTCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTAGCTGTTATACCTCAGGATCCAACCCTTTTTAATGGGACAGTTAGATATAATTTGGACCCTTTATCCCAACACACTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCATGAGAAAGAAGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGTTCAAATTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCTCTTTTGAGAAGAAGTAGGATACTGGTGTTGGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTACAGAAAACGATTAGAACTGAGTTTGAAGATTGTACAGTGATCACTGTAGCCCACAGGATACCAACTGTGATGGATTGTACTGTGGTTCTTTCAATCAGTGATGGAAAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAAAGAAGATTCCCTGTTCAGACAACTTGTCAAGGAATACTGGTCTCATTTTCAGTCTGCCGAATCACATTGA 4482 0.3851 MSCSQPEFEQQREAEKKMENFWSIICGDSCCSETAGGKPYCYDFKLLRDPSSCINHLFIICFDVLLLILLSFIMIFKPSLRPFWSQTRYSKLQLVSAITNGSLGLLHLCLGIWILEENLRKTHKAFPLNWWLLELFQGFTWLLVGLTLSLYQKQLPKACLWLLSILVFSASAVFCALSMSYAISNRDLSLKAVLDVVSFPGAILLLLCTYNASKFENTNDRDEIDESLHAPLNSQFNEVDPITPFAKAGFLSKMSFWWLNPLMKRGQEKTLQDEDIPKLQDSDRAESCYSSFVEQLDRQRQTEPLSQSTVLWTIVLCHQREILISGLFALLKVLTLSSGPLFLNGFILVAEGNESFKYEGYVLAISLFFIKIIESLSQRQWYFRSRLVGMKVKSLITAAIYKKTLRLSNGARLIHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTILQLCIALVILFHAVGLATIASLVVIVLTVLCNTPIAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWEIHFKNSIEKLRNLELKLLSAVQFSKAYNIFLFWISPMLVSTASFVACYFLKIPLHANNVFTFVATLRLVQDPITAVPEVIGAVIQAKVAFARIVKFLEAPELQSADFRKRCYNDNLRGSILIKNADFSWESNVSKPTLRNINLEVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVHGKFAYVSQTAWIQTGTIRENILFGSYLDVQRYQETLHRCSLMEDLELLPHGDLTEIGERGVTLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNEYIMEGLKGKTLLLVTHQVDFLPAFDFVLLMSDGEILQAAPYHHLLTTSREFQDLINAHKDIAGSDHLVNVINSYQRHPTSREIIQDFKENQLKTTNGNQLIKQEEREIGDIGLKPYLQYMNQMKGYIYFFVASLCHLIFFICQILQNTWMAANVDNHHVSTLQLIEVYFLIGAISTIFLLIRSLLVVALGLQSSKHLFLLLMNSLFHAPMSFYDSTPLGRILSRVSSDLGIMDLDIPFTLTIAVGSTINFYAILIVLEVFTWQVLVVSIPMVYIAIRLQRYYFSSAKEVMRMNGTTKSFVANHVAETVAGAVTIRAFEEEERFFEKNLDLIDINASAFFHSFSSNEWLIERLETIGAVILASAAFCMVMLPPGTFNSGFIGMALTYGLSLNVALVYSIQSQCALTNHIVSVERLSQYMHIQSEAQEVVEGNRPPLNWPVAGEVEINDLQIRYTPDGPLVLHGITCTFEAGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIIDDIDISSIGLHDLRSRLAVIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVHEKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFEDCTVITVAHRIPTVMDCTVVLSISDGKLVEYDEPMNLMKKEDSLFRQLVKEYWSHFQSAESH. 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04502 1493 CDD ABC_6TM_ABCC_D2 933 1222 IPR044726 GO:0140359
Seca9g04502 1493 Gene3D ABC transporter type 1, transmembrane domain 310 613 IPR036640 GO:0005524|GO:0016020
Seca9g04502 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 861 IPR027417 -
Seca9g04502 1493 SUPERFAMILY ABC transporter transmembrane region 930 1227 IPR036640 GO:0005524|GO:0016020
Seca9g04502 1493 SUPERFAMILY ABC transporter transmembrane region 311 616 IPR036640 GO:0005524|GO:0016020
Seca9g04502 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1247 1481 IPR003439 GO:0005524
Seca9g04502 1493 FunFam ABC transporter C family member 10 622 874 - -
Seca9g04502 1493 CDD ABC_6TM_ABCC_D1 324 611 IPR044746 GO:0140359
Seca9g04502 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 861 IPR003439 GO:0005524
Seca9g04502 1493 Gene3D ABC transporter type 1, transmembrane domain 894 1229 IPR036640 GO:0005524|GO:0016020
Seca9g04502 1493 Pfam ABC transporter transmembrane region 323 585 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04502 1493 Pfam ABC transporter transmembrane region 931 1174 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04502 1493 FunFam ABC transporter C family member 5 896 1228 - -
Seca9g04502 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 323 603 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04502 1493 Gene3D - 1230 1482 IPR027417 -
Seca9g04502 1493 Gene3D - 614 874 IPR027417 -
Seca9g04502 1493 SMART AAA_5 665 838 IPR003593 GO:0016887
Seca9g04502 1493 SMART AAA_5 1273 1456 IPR003593 GO:0016887
Seca9g04502 1493 Pfam ABC transporter 656 790 IPR003439 GO:0005524
Seca9g04502 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 971 1210 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04502 1493 CDD ABCC_MRP_domain1 638 838 - -
Seca9g04502 1493 CDD ABCC_MRP_domain2 1245 1465 - -
Seca9g04502 1493 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524|GO:0016887
Seca9g04502 1493 Pfam ABC transporter 1264 1412 IPR003439 GO:0005524
Seca9g04502 1493 FunFam ABC transporter C family member 3 1230 1482 - -
Seca9g04502 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1237 1480 IPR027417 -
Seca9g04502 1493 FunFam ABC transporter C family member 10 306 619 - -
Seca9g04502 1493 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 245 1481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04502 Seca-Chr9 118273353 118280159 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04502 632 891 Calmodulin-binding Proteins AT2G36910 29.730 1.77e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04502 K05666 - gmx:100787314 2321.97