Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04494 ATGAGGAATCTGCGCGGCGGTGGTGATGGGGAGCGGCGCTGGCCGCGCCTGACAGGGGCTCGCGAAGGGAAGGGGTACGGTTATGCGGCCGCCACAGATCTGAACACTCCCCTACCGATGAATAACTCGCTTGTTAGTGAAGAGGAACTCGTTGGCAATGGCCGATACCGATGTGCGAGATTGTTTGTGTTCGAAACTAGTTCAGTTGCTTTTATTTTCCCTCTCTATTGCAATGCTTCTAGAGATTTTGGGTGGCAACTGAGATATGGTCGTCTCTGTGGAAGAGTAGTTGTACTTTCAATCCTTGCATTGATTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGCACCCTATGGTTCAACAATGCTAAAATCTGCTTGCCTGGACAGGGTCAGAATTGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGCAATGTTTGCATATCTGCGGGGAAGCTTGTTCAATTCTATGCAGTGGTTGACACAAAGACAAGCACACTGTCAGGTGCCCAACAGAGTATCCCTGTATCTGGATATGTGTTGGATGGGGGAGATGTTGCAAGTGGAGGTCTTAGAGAACTAATACCTTGCATTGCAAGGACTGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAGTGCACCTGTTGATGGTCCAACACAGTGGGGATTTATAAACCTGCTGAGTTTTGGCAACTTGAAGACCAAACGCCACAACCTACAAAAAGAAGGCATGGATTATCTGTTTACACACTCAAGGAGATGGAAGAGGCAACATGATCATTCAGTGATGATAATCTTCTTGGAAAAGGATATGGCAGGGTCTAAAGGGGTTGTTGCAATCAAGAAAATGGAGCTACCAACAATTAAAGGAGCAGAGGGGGAATGCGAATTCCGAGTAAAAGTTGACATATTGAGCAGGCTTGACCACCCAAATCTTGTTTCTTTGATTGGGTACTGTGCTGATGGGAAGCATAGATTCCTAGTGTATGAATATATGCTTAATGGGAACCTGCAAGATCATTTGAATGGAATCAGGGAAACGAAAATGGATTGGCCTCTGAGACTCAAAGTGGCATTGGGAGCTGCAAAAGGTCTTGCTTATCTCCAGTCAAGTTCTTGTGCCAATTTTGAAGAAAAGAAGGACAGGAGACACGTGACTGCCAGAGTACTTGGTTATTGGTCTAATTACTCTGGATTATCAATTGTTCCCCCAGAATCTCTTTATTCCAAACCAGCCAATCGTTCCAGGGCAAATCAGAAGCTATTCCCTGTGATTTGGCCTGGAGATACAGACCAAAAGCCTCGTGGTTGGGTTTTTCCAGACAGTGGAAGGCTTTTAAAAATTGGAGTACCAAAAGGTGTCAGTTATCATGAATTTGTCTCACAAATACCAGGCACTGATACATTTCAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTTTTGCCTTATTCGGTCCCTTATAAGTTTATCCCATATGGGAATGGTAAGAACAATCCTAGTATCACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAAATGGTGGATTTTACTCAGCCATATATTGAATCTGGTCTAGTGGTAGTAGCCCCAGTTAAGGAGTCAGAAACCAGTGCTTTGGCCTTTTTGGCCCCATTTACACCAAGGATGTGGCTTGTCACAGCTGTCTTTTTCATATTAGTGGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAGTTTGGGGGACCACCCAAAAAACAAGTAGCTACTATTTTATGGTTTAGTTTTTCTACTATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGCTGCTTATATGGCTTTTTGTAGTTCTGATAATTAACTCAAGTTACACGGCAAGCCTAACCTCAATCCTCACAGTGCAGCAACTTTCTTCCCTCATTAAAGGTATTGAAAGTTTAGCAAATAGCAAAGAACCCATCGGGTACACGCAGGGTTCTTTTGCTAAAAATTATTTAATTCAGGAAATTGGTATTGATGAGTCAAGACTTGTTCCTCTAACAACACCAGAAGAATCTGCTAGAGCACTGAAAAAGGGTCCCCAAAATGGTGGCCTTGCTGCTTACATTGATGAGCGTGCCTACATTGACGAGCGTGCCTACATTGACCTCTTCCTTCCAAGCCAGTGTGAACTTACTGTTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTAGGAGATAG 2328 0.4394 MRNLRGGGDGERRWPRLTGAREGKGYGYAAATDLNTPLPMNNSLVSEEELVGNGRYRCARLFVFETSSVAFIFPLYCNASRDFGWQLRYGRLCGRVVVLSILALILYPFLWAWTIIGTLWFNNAKICLPGQGQNWGFLIWLLFSYCGLLCNVCISAGKLVQFYAVVDTKTSTLSGAQQSIPVSGYVLDGGDVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWGFINLLSFGNLKTKRHNLQKEGMDYLFTHSRRWKRQHDHSVMIIFLEKDMAGSKGVVAIKKMELPTIKGAEGECEFRVKVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMLNGNLQDHLNGIRETKMDWPLRLKVALGAAKGLAYLQSSSCANFEEKKDRRHVTARVLGYWSNYSGLSIVPPESLYSKPANRSRANQKLFPVIWPGDTDQKPRGWVFPDSGRLLKIGVPKGVSYHEFVSQIPGTDTFQGFCIDVFLSAVNLLPYSVPYKFIPYGNGKNNPSITELVRLITTGEFDGAVGDIAITTERTKMVDFTQPYIESGLVVVAPVKESETSALAFLAPFTPRMWLVTAVFFILVGTVVWILEHRVNDEFGGPPKKQVATILWFSFSTMFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSLIKGIESLANSKEPIGYTQGSFAKNYLIQEIGIDESRLVPLTTPEESARALKKGPQNGGLAAYIDERAYIDERAYIDLFLPSQCELTVVGQEFTRNGWGFRR. 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04494 775 Gene3D - 571 702 - -
Seca9g04494 775 SUPERFAMILY Periplasmic binding protein-like II 437 773 - -
Seca9g04494 775 Pfam Bacterial extracellular solute-binding proteins, family 3 480 727 IPR001638 -
Seca9g04494 775 FunFam Glutamate receptor 455 571 - -
Seca9g04494 775 Gene3D - 461 570 - -
Seca9g04494 775 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 399 773 IPR015683 -
Seca9g04494 775 Gene3D Transferase(Phosphotransferase) domain 1 281 439 - -
Seca9g04494 775 Pfam Ligand-gated ion channel 581 708 IPR001320 GO:0015276|GO:0016020
Seca9g04494 775 Gene3D Aldolase class I 181 256 IPR013785 -
Seca9g04494 775 SUPERFAMILY Protein kinase-like (PK-like) 290 385 IPR011009 -
Seca9g04494 775 Pfam Protein tyrosine and serine/threonine kinase 284 387 IPR001245 GO:0004672|GO:0006468
Seca9g04494 775 SMART GluR_14 461 775 IPR001320 GO:0015276|GO:0016020
Seca9g04494 775 SUPERFAMILY Aldolase 188 240 - -
Seca9g04494 775 FunFam Glutamate receptor 571 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04494 Seca-Chr9 117895511 117902099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04494 402 773 Ion Channels AT1G42540 67.828 4.27e-167 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Seca9g04494 SBP_bac_3 7.3e-13 CL0177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04494 K05387 - gmx:100793320 625.935