Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04483 ATGGAAGATTTTTGGAGCATGATTTGTGGGGATTCTGGTTTTTCTGAAACTGGAGGAAAGTCTTTCTGTTATGATTTCAAGTTTCTGAAGGATCCTTCCACATGCATCAACCATTTGCTTATCATTTTCTTTGATATGTTACTGTTGATCATGCTGTCATTCATTATGATCCAAAAGTCTTCGTCAAGACCATTTTGGGGTCTAATCCGAGTGGAAAGATATTCGAACATGCAGCTAGTTTCTGCCATAACCAATGCCTCTCTTGGTTTGATGCATTTTTGCTTATTAGGAATTTGGGTCTTGGAGGAAAAATTAAGGAAAACTCACACAGTTTTTCCTCTTCACTGGTGGTTGCTGGAACTCTTCCAGGGATTCACATGGTTGTTAGTAGGTATAACTGTAAGTTTCCAACTGAAACAACTTCCAAGAGCATGGTTGTGGCTGTTTTCTATTGTTATTTTCTTTGTTTCTGGTATTTTTTGTGCTTTATCCATGTCTTATGCAATTAGCAGCAGAGAAGTGTCCCTCAAGGCAGCTTTAGATGTTCTATCTTTCCCAGGAGCAATTTTATTGCTCTTATGCACATATAAAGCAGGTAAATGTGAAGAAACTGGCAGAGAAATTGATGAAATCCTTTATTCCCCTTTAAATAGCCAGTTCAATGAAGTTGATGCTGTTTTCCATGTAACCCCATTTGCTAAAGCTGGATTTTTTAGTAGAATGTCATTTTGCTGGTTAAATCCATTGATGAAAAGGGGTCAAGAGAAAGCACTTCAAGATGAGGATATCCCAAAGTTGCGTGAGTCAGATCAAGCTGAAAGTTGTTATTTGTTGTTTGAAGAACAATTAAACAGTCAAAAACAAAAGGAATCATCATCACAGTCATTGGTTTTATGGACAATAATTTCGTGCCACCAGAGAGATATTTTGATATCCGGATTCTTTGCTTTTCTCAGGGTACTTGCTCTTTCTTGTAGTCCTCTACTTCTGAATGCTTTTATATTGGTTGCTGAGGGTCACTACTTACTGCAGCAATTTATACAAAAAACATTAAGGTTATCCAATGCTTCTAGATTGATTCACTCTGGTGGTGAGATAATGAATTATGTGACTGTTGATGCTTATAGGATTGGAGAATTTCCATTTTGGTTTCACCAGACATGGGCAACAATCCTCCAAATATGTATTGCACTTGTAATTCTTTTCAATGCTGTTGGACTTGCAACAATTGCCTCATTGGTGGTGATAGTTCTCACAGTGCTCTGCAACACTCCATTAGCAAAGTTACAACACAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTGCTAAAGCTATATGCATGGGAAACCCATTTTAAAAATGCTATAGAAAAGTTAAGAAATATGGAACTCAAAATGTTAGCTGCGGTGCAGTTAAGAAAGGCATACAACATCTTTCTCTTTTGGACCTCGCCTACTTTGATCTCTGCAGCTACTTTTTTGGCATGTTACTTCCTGAAAATTCCTTTACATGCAAATAATGTTTTCACCTTTGTGGCAACTTTGCGCCTTGTGCAAGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTTATCATTCAGGCAAAAGTTGCATTTGCTAGGATTGTTAAATTCCTTGAGGCACAAGAACTGCAGAGTGCAAATTTCATAAAGAGGTGCTTTGATGACAATCTCAGAGGCTCAATTTCAATAAAATCTGCTGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTGAGGAACATAAATTTGGAGGTTAGACATGGGCAAAAGGTGGCTATCTGTGGAGAAGTTGGCTCTGGCAAATCAACTCTTTTAGCAACAATTCTTGGAGAAGTTCCCAATACAAAAGGAACGATTGATGTTCAAGGGAAGCTTGCATATGTTTCTCAAACAGCATGGATACAGACAGGTACAATACGGGAAAATATTTTGTTTGGATCTGATTTAGATGATCAAAGATATCAAGAAACACTTCACAGATGTTCACTAATGAAGGACCTTGAGTTGTTTCCCCATGGTGACCTTAGTGAAATAGGTGAGAGAGGAGTTACACTAAGTGGAGGTCAGAAGCAGAGAATTCAACTTGCACGTGCACTTTATCAGAATGCTGATGTGTATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACAAGTTTGTTTAATGAATACATCATGAAAGGACTTGAAGGGAAAACTGTCGTACTTGTGACCCATCAAGTTGACTTCCTCCCAGCAATTGAATCTGTTTTGTTGATGTCAAATGGGGAAATCCTACAAGCTGCTCCTTATCACCATCTATTGACTTCAAGCAAGGAATTCCATGAACTTGTCAACGCTCACAAGGAAACTGCTGGTTCTGATCACCAGCTTGTGAATGTTACTTCTTCCCAGAAACAAACTTCTGCTAGAGAGATTACAAAAGCTTTCAAGGAGAAGTTTAAAGTAGCAAATGGAAATCAATTAATTAAGCAAGAAGAGAGAGAGATAGGAGACATTGGATTGAAGCCTTACTTACAATATCTGAATCAAATGAAAGGCTATATATATTTCTCTATGGCTTCCCTTTGTCACCTTATATTTGTGATTTGTCAGATATTGCAAAACTCATGGCTGGCTGCAAATGTTGACAATCCCCATGTCAACACATTGCAATTGATTGTAGTTTATTTCCTGGTTGGAGCTCTATCAACACTTTTCTTGTTGATCAGATGTCTAATTATAGTGGCTATGGGTCTTCAATCATCAAAATACTTATTTTTACAGTTAATGAGCTCCCTTTTTCGTGCACCAGTGTCTTTTTATGACTCTACACCACTGGGAAGGATACTTAGTAGGGTCTCATCAGATCTGATTTTAGCAGTTGTCACTTGGCAAGTCTTGGTTGTCTCAATACCAGTGGTTTATGTTGCAATTCGCTTGCAGAGATACTACTTTGCCTCGGCAAAAGAAATGATGAGGATGAATGGCACAACAAAATCCTTTTTAGCCAATCACGTGGCTGAAACAGTTGCTGGAGCTGTGACAATAAGGGCGTTCGAGGAAGAAGATCGTTTCTTTGTGAAGAATCTTGATCTAATTGATATCAATGCTAGTGCTTTCTTCCATAGTTTTGTCTCAAATGAGTGGTTGATCCAACGGTTAGAATTATTCGGTGCAATTGTTCTTGCCTTTGCAGCGCTTTGCATGGTTATGCTCCCGCCTCAGATTTTCACCTCAGGATTTATTGGCATGGCTCTATCTTATGGCCTTTCACTAAACGCTGCCTTAGTATTTTCAATTCAAAGTCAATGCACTCTTGCAAATCATATAATATCTGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCCCAAGAAGTAATTGAAGGAAATCGTCCTCCTTTGAATTGGCCAGCTGCAGGGCAAGTAGAAATAAATGACTTACAGATTCGGTACAGGCCTGATGGACCACTTGTACTTCACGGGATCACATGCACATTAGAAGCAGGACATAAGATTGGCATTGTTGGCAGGACGGGTAGTGGGAAATCCACTCTTATAGGTGCTTTATTTCGTCTTGTGGAGCCAGCAGGAGGAAAAATTATAATTGATGGCATAGATATCTCTTCTATTGGCCTTCATGATTTAAGGTCACGTTTAGGAAAATTGGCGGAGTATAATGAACCAATGAAATTGATGAAGAGAGAGAAATCGTTGTTTGGGCAACTTGTAAAGGAATACTGGTCTCATATTCAGTCTTCCGAATCACATTGA 3843 0.3885 MEDFWSMICGDSGFSETGGKSFCYDFKFLKDPSTCINHLLIIFFDMLLLIMLSFIMIQKSSSRPFWGLIRVERYSNMQLVSAITNASLGLMHFCLLGIWVLEEKLRKTHTVFPLHWWLLELFQGFTWLLVGITVSFQLKQLPRAWLWLFSIVIFFVSGIFCALSMSYAISSREVSLKAALDVLSFPGAILLLLCTYKAGKCEETGREIDEILYSPLNSQFNEVDAVFHVTPFAKAGFFSRMSFCWLNPLMKRGQEKALQDEDIPKLRESDQAESCYLLFEEQLNSQKQKESSSQSLVLWTIISCHQRDILISGFFAFLRVLALSCSPLLLNAFILVAEGHYLLQQFIQKTLRLSNASRLIHSGGEIMNYVTVDAYRIGEFPFWFHQTWATILQICIALVILFNAVGLATIASLVVIVLTVLCNTPLAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWETHFKNAIEKLRNMELKMLAAVQLRKAYNIFLFWTSPTLISAATFLACYFLKIPLHANNVFTFVATLRLVQEPITAIPDVIGVIIQAKVAFARIVKFLEAQELQSANFIKRCFDDNLRGSISIKSADFSWEGNVSKPTLRNINLEVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVQGKLAYVSQTAWIQTGTIRENILFGSDLDDQRYQETLHRCSLMKDLELFPHGDLSEIGERGVTLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATSLFNEYIMKGLEGKTVVLVTHQVDFLPAIESVLLMSNGEILQAAPYHHLLTSSKEFHELVNAHKETAGSDHQLVNVTSSQKQTSAREITKAFKEKFKVANGNQLIKQEEREIGDIGLKPYLQYLNQMKGYIYFSMASLCHLIFVICQILQNSWLAANVDNPHVNTLQLIVVYFLVGALSTLFLLIRCLIIVAMGLQSSKYLFLQLMSSLFRAPVSFYDSTPLGRILSRVSSDLILAVVTWQVLVVSIPVVYVAIRLQRYYFASAKEMMRMNGTTKSFLANHVAETVAGAVTIRAFEEEDRFFVKNLDLIDINASAFFHSFVSNEWLIQRLELFGAIVLAFAALCMVMLPPQIFTSGFIGMALSYGLSLNAALVFSIQSQCTLANHIISVERLNQYMHIQSEAQEVIEGNRPPLNWPAAGQVEINDLQIRYRPDGPLVLHGITCTLEAGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIIDGIDISSIGLHDLRSRLGKLAEYNEPMKLMKREKSLFGQLVKEYWSHIQSSESH. 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04483 1280 Pfam ABC transporter 1183 1251 IPR003439 GO:0005524
Seca9g04483 1280 CDD ABC_6TM_ABCC_D1 311 557 IPR044746 GO:0140359
Seca9g04483 1280 Gene3D ABC transporter type 1, transmembrane domain 279 565 IPR036640 GO:0005524|GO:0016020
Seca9g04483 1280 Gene3D ABC transporter type 1, transmembrane domain 979 1148 IPR036640 GO:0005524|GO:0016020
Seca9g04483 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 881 1129 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04483 1280 SUPERFAMILY ABC transporter transmembrane region 298 562 IPR036640 GO:0005524|GO:0016020
Seca9g04483 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 586 807 IPR003439 GO:0005524
Seca9g04483 1280 CDD ABC_6TM_ABCC_D2 883 1141 IPR044726 GO:0140359
Seca9g04483 1280 ProSitePatterns ABC transporters family signature. 709 723 IPR017871 GO:0005524|GO:0016887
Seca9g04483 1280 FunFam ABC transporter C family member 10 340 565 - -
Seca9g04483 1280 FunFam ABC transporter C family member 10 568 820 - -
Seca9g04483 1280 Pfam ABC transporter transmembrane region 877 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04483 1280 Pfam ABC transporter transmembrane region 980 1089 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04483 1280 Pfam ABC transporter transmembrane region 340 532 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04483 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 807 IPR027417 -
Seca9g04483 1280 CDD ABCC_MRP_domain1 584 784 - -
Seca9g04483 1280 SMART AAA_5 611 784 IPR003593 GO:0016887
Seca9g04483 1280 SMART AAA_5 1192 1280 IPR003593 GO:0016887
Seca9g04483 1280 SUPERFAMILY ABC transporter transmembrane region 875 1146 IPR036640 GO:0005524|GO:0016020
Seca9g04483 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 345 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g04483 1280 Gene3D - 1150 1272 IPR027417 -
Seca9g04483 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1156 1246 IPR027417 -
Seca9g04483 1280 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1244 - -
Seca9g04483 1280 Gene3D - 579 813 IPR027417 -
Seca9g04483 1280 Gene3D ABC transporter type 1, transmembrane domain 816 978 IPR036640 GO:0005524|GO:0016020
Seca9g04483 1280 Pfam ABC transporter 602 736 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04483 Seca-Chr9 116227830 116236754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04483 578 831 Calmodulin-binding Proteins AT2G36910 28.571 1.10e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04483 K05666 - gmx:100786761 1884.38