Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04474 ATGTTGGAGAAGGAACTCTCCACCACCACCATTGCCACCGCGGTTACATGGGCACGTACCTGTGATACATGTCGCTCTGCGGCATGCACGGTTTTCTGCCATGCAGACTCGGCGTATTTGTGCGCCGAGTGTGATGCACGCGTGCATGCGGCAAATCATGTAACATCGCAGCATGAGCGTGTGTGGGTCTGCGAGGCCTGCGAGCGTGCTCCGGCTGCGTTTCTCTGCAAGGCTGATGCAGCTTCACTCTGCTCTTCCTGCGATGCTGACATCCATTCTGCCAACCCTCTTGCCAGCCGCCACCAGCGTGTCCCCATTCTTCCCATCTCTGGCTGTATCTATGGCCCCTCTGCCACTCTTTTGGGTGCTCAAGATGATGGTTTTGTTGGTGGTGGTGAGGTGGAGGAAGAGGAGGATGAAAGTGTTGATGTTGATGATGAAAATGAAGCAGCTTCGTGGCTGTTACTAAATCCTGTGAAGAACAACAATCAACAGGGTAATGGGTTCTTGTTTAATGGGGAGGTTGATGATTATTTGGACCTTGTGGATTGTAATTGTTGTAGTGACAACAAGTTCACTACTGCTGCTACTGATCATTACAGTCATCATCATCAGCAGCAACATTATGGTGTTCCTCAGAAGAGTTGTGCTGGAGATAGTGAGGTTCCACTTCAGCAACAGCAGCAGGCACAGCATTTTCAGCTTGGGTTGGACTTTGAGTCCTCAAAAGCTGGGTTCAGTTACAATGGTTCTATTACTCAAAGTGTAAGGCTCTTCAATTCCCTCTTTGAAAATCAGGTTTCAGTTTCATCAATGGATGTAGGTGTTGTACCAGAATCTACAATCAGGGATGTTTCAAATTCCTACTCAAGACCCCCCACAGGGACAATTGACCTATTTTCTCGTCTTCTCATTCAGATGCCTTCCCATCTTACTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAGGAAGACAAGAAAATTTGAGAAAACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGAATAGACCTCGCATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATGACAGAAGTTGGATATGGCCTTGTTCCCTCTTTCTGA 1158 0.4758 MLEKELSTTTIATAVTWARTCDTCRSAACTVFCHADSAYLCAECDARVHAANHVTSQHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGCIYGPSATLLGAQDDGFVGGGEVEEEEDESVDVDDENEAASWLLLNPVKNNNQQGNGFLFNGEVDDYLDLVDCNCCSDNKFTTAATDHYSHHHQQQHYGVPQKSCAGDSEVPLQQQQQAQHFQLGLDFESSKAGFSYNGSITQSVRLFNSLFENQVSVSSMDVGVVPESTIRDVSNSYSRPPTGTIDLFSRLLIQMPSHLTPMDREARVLRYREKRKTRKFEKTIRYASRKAYAENRPRIKGRFAKRTDVEAEVDQMFSTTLMTEVGYGLVPSF. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04474 385 CDD Bbox1_BBX-like 21 63 - -
Seca9g04474 385 SMART bboxneu5 16 58 IPR000315 GO:0008270
Seca9g04474 385 SMART bboxneu5 59 106 IPR000315 GO:0008270
Seca9g04474 385 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Seca9g04474 385 CDD Bbox1_BBX-like 63 106 - -
Seca9g04474 385 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Seca9g04474 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 375 IPR045281 GO:0009909
Seca9g04474 385 Pfam CCT motif 316 358 IPR010402 GO:0005515
Seca9g04474 385 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
Seca9g04474 385 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04474 Seca-Chr9 115168626 115171158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04474 16 385 C2C2-CO-like Transcription Factor Family AT3G02380 55.172 1.91e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca9g04474 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04474 K12135 - tpra:123889374 503.827