Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04435 ATGGGGCGAGTTTGGATGAAGACGTTGAAGAAGTCGTCTCGGCAAGTGATAGAGAGGTACTACTCTCGGATGACGCTAGATTTCCACACGAACCAGAAAGTTCTGGAGGAACTGGCGAGCATGCTCTTGATCGGGGTCCTGGTGGTGGCCCTAACCACATTGCCTCAAGAAGATTTGGATTTAGAGGTACTGAACTTACTAATTTTATGGCTCAAGAACTTGGCAAATTCAGTTCGCTAG 240 0.475 MGRVWMKTLKKSSRQVIERYYSRMTLDFHTNQKVLEELASMLLIGVLVVALTTLPQEDLDLEVLNLLILWLKNLANSVR. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04435 79 PANTHER 40S RIBOSOMAL PROTEIN S17 1 40 IPR001210 GO:0003735|GO:0005840|GO:0006412
Seca9g04435 79 Pfam Ribosomal S17 1 40 IPR001210 GO:0003735|GO:0005840|GO:0006412
Seca9g04435 79 Gene3D - 1 44 IPR036401 GO:0003735|GO:0005840|GO:0006412
Seca9g04435 79 SUPERFAMILY Rps17e-like 1 40 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04435 Seca-Chr9 113223825 113224064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04435 1 39 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 82.051 3.97e-19 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04435 K02962 - vvi:100256195 70.0922