Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g04415 | ATGTATAGTAGACTTGAATTCTTACACTTATTTGAGTTATTTCTATTTATATATACATTAAAATATCTAAATCTGCAGGATGAATCATCTTTAATCTGGATTTCAAATAGTGAAGAAAGAATTCTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGTCAAAGAACTGCTGTTTTTCAACGTTATCTGCGTCCTGAGAAGGACTATTTGTCCTTTTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTTCTGGTCTCAAAGCACTGATATCTTCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGCTTCAATCTTGATGATAGCAGAGACTTAACATCAAATAGTCCAAGTGAAAGTTCAGCTAGCGCGTCACGTGACATTAGTTCTCCTGACATTTCTGTGAGTCTTCCAAATACTTCTCCAAAGTCCTTTCGTCCTGACAGTACCTTAAATTCTGAAAGGTCACATGCACCATCAGAACCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTTTTCGTGTTAGTGTGTCAAGTGCCCCCAGCACATCTAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGATTATCTGTGAAAACTTGAAAGTTGGTGCTGATAAAAGTGTCACTTATTTCAGCCCGAGGGCAGATGTGCTTCTCCCTAGATCACTAGAATCCAATGTAGTTTTAGATGTACACCATATAGCGTGTGGTGTTAGACATGCTTCTTTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAGCTGTTGATTTTGTTGCCTGTGGGGAGTTCCATTCCTGTGCTGTCACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGATTACTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCATTAGAGGGACTTAAAGTTGCATTTGTTGCTTGTGGTCCATGGCACACAGCTTTGATAACTTCAACTGGGCAGCTTTTCACATTTGGTGATGGAACTTTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATATCCAAGAGAAGTGGATTCCTTATCTGGATTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACAATCTAGTGCAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGGCATGGGGACAAGGAGGCGCGGCTTAAACCAACTTGTGTGCCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTAGGCCTGACAACATCTGGGCGTGTTTTTACTATGGGGAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTGCCCTGCTTGGTTGGAGACAAGATTGCTGGGGAATCCATTGAAGAAATTGCATGTGGTGCATATCATGTGGCCGTTTTAACATCCAAAAATGAAGTTTTTACCTGGGGTAAGGGGGCAAATGGGAGATTGGGTCATGGAGATCTTGAAGATCGAAAAACACCAACATTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCATTCAAGGAAAGCATTAAGAGCTGCACTGGCACCTAATCCTGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGCAAAATTGAATAAGGTTGCAGAAGCTAACAATAATAATCGGAGGAATGCTTTGCCACGTCTGTCGGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGCTAAGACTGTCCAAGTCAGTAATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGAAAGAAAGCTGATACGTTCTCACTAGTTCGCACCTCACAAGCACCTTTGCTACAGCTGAAAGATGTTGTCTTCTCCACTGCTGTTGATCTGAGACGAACAGTTCCAAGACCAGTGATTGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCCCCTTTCTCGAGAAGACCAAGCCCCCCTCGTTCGGCCACACCTATTCCAACAACATCAGGACTTTCCTTCTCCAAAAGTATTGCTGATAGTTTGAAGAAAACTAATGAACTTCTAAATCAAGAAGTGCAGAAGTTACGTACTCAGGTCGAGAGCCTGAGACAAAGATGTGAACTACAAGAATTAGAGCTTCAAAGGTCAGCGAAAAAGACTCAAGAAGCTATGGCACTGGCTGCTGACGAATCTGCTAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACGGCACAGCTCAAAGATCTCGCTGAGAAGCTTCCTCCTGGAGTTTATGATGCCGAAAACAGTAAACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACCATCCAGATTCAAATGGGGAGCTGAACTCCAGGGCTGAATCAATCAGTGGATCTAGTTTGGCTTCCATAGGACTTGAGTCCTCTCTGTTGAATAGAACTGCAGGGAATTTGCCAGGAACCTATGGAACTAATATTCACCATCAAATCCGGGGTCTTGTGACCTCTAATGGGACCAATAGTTATCCTGATGTTAAATTGCCAAATGGTGATGGTGTGATTCGTGCGAGTAGCAGTAGTATGTCAGATACTGTTGATGGTAGGGATTCTGGCCATTCCCATGAAGACGAGAGTGGTTTGAGATCAAGGAATGCTGCACTAGCTGCTAATAGTAGCCAAATCGAGGCGGAATGGATTGAACAGTATGAACCTGGCGTCTATATAACACTTGTGGCCTTGCATGATGGAACAAGAGATTTGAAGCGCGTGCGCTTCAGACTCTTAGCCGGAGGAGATTTGGGGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGACAAGGTATATGAAAAATACAATGTCCGTGGTGCTGAAGTCTTCCGGCCAAGCAGCACGTAGGGCAGAGGGTGCTGGTTCTCCTGTCACCCAAACTTAG | 3222 | 0.4364 | MYSRLEFLHLFELFLFIYTLKYLNLQDESSLIWISNSEERILKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWISGLKALISSGQGGRSKIDGWSDGGFNLDDSRDLTSNSPSESSASASRDISSPDISVSLPNTSPKSFRPDSTLNSERSHAPSEPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEIICENLKVGADKSVTYFSPRADVLLPRSLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTAVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLKVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVDSLSGLRTIAVACGVWHTAAVVEVIATQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGESIEEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDLEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSHSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEANNNNRRNALPRLSGENKDRLDKSELRLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPLLQLKDVVFSTAVDLRRTVPRPVIAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLRTQVESLRQRCELQELELQRSAKKTQEAMALAADESAKSKAAKEVIKSLTAQLKDLAEKLPPGVYDAENSKPAYLPNGLEPNGIHHPDSNGELNSRAESISGSSLASIGLESSLLNRTAGNLPGTYGTNIHHQIRGLVTSNGTNSYPDVKLPNGDGVIRASSSSMSDTVDGRDSGHSHEDESGLRSRNAALAANSSQIEAEWIEQYEPGVYITLVALHDGTRDLKRVRFRLLAGGDLGSTKQRLGGQRTGTRYMKNTMSVVLKSSGQAARRAEGAGSPVTQT. | 1074 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g04415 | 1073 | MobiDBLite | consensus disorder prediction | 962 | 976 | - | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 385 | 436 | IPR000408 | - | |
| Seca9g04415 | 1073 | Gene3D | - | 18 | 110 | IPR011993 | - | |
| Seca9g04415 | 1073 | Coils | Coil | 774 | 815 | - | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 552 | 603 | IPR000408 | - | |
| Seca9g04415 | 1073 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 188 | 437 | - | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 278 | 329 | IPR000408 | - | |
| Seca9g04415 | 1073 | MobiDBLite | consensus disorder prediction | 125 | 210 | - | - | |
| Seca9g04415 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 489 | 507 | IPR000408 | - | |
| Seca9g04415 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 330 | 346 | IPR000408 | - | |
| Seca9g04415 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 280 | 296 | IPR000408 | - | |
| Seca9g04415 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 387 | 401 | IPR000408 | - | |
| Seca9g04415 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 547 | 568 | IPR000408 | - | |
| Seca9g04415 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 371 | 387 | IPR000408 | - | |
| Seca9g04415 | 1073 | Gene3D | - | 341 | 437 | IPR009091 | - | |
| Seca9g04415 | 1073 | Gene3D | - | 165 | 340 | IPR009091 | - | |
| Seca9g04415 | 1073 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 371 | 381 | IPR000408 | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 500 | 551 | IPR000408 | - | |
| Seca9g04415 | 1073 | MobiDBLite | consensus disorder prediction | 932 | 976 | - | - | |
| Seca9g04415 | 1073 | Coils | Coil | 830 | 850 | - | - | |
| Seca9g04415 | 1073 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 990 | 1020 | IPR013591 | - | |
| Seca9g04415 | 1073 | MobiDBLite | consensus disorder prediction | 125 | 209 | - | - | |
| Seca9g04415 | 1073 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 39 | 846 | - | - | |
| Seca9g04415 | 1073 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 438 | 609 | - | - | |
| Seca9g04415 | 1073 | SUPERFAMILY | RCC1/BLIP-II | 216 | 605 | IPR009091 | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 448 | 499 | IPR000408 | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 330 | 384 | IPR000408 | - | |
| Seca9g04415 | 1073 | Pfam | Pleckstrin homology domain | 37 | 104 | IPR001849 | - | |
| Seca9g04415 | 1073 | MobiDBLite | consensus disorder prediction | 870 | 889 | - | - | |
| Seca9g04415 | 1073 | MobiDBLite | consensus disorder prediction | 734 | 767 | - | - | |
| Seca9g04415 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 553 | 600 | IPR000408 | - | |
| Seca9g04415 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 447 | 494 | IPR000408 | - | |
| Seca9g04415 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 278 | 326 | IPR000408 | - | |
| Seca9g04415 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 499 | 548 | IPR000408 | - | |
| Seca9g04415 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 330 | 381 | IPR000408 | - | |
| Seca9g04415 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 385 | 433 | IPR000408 | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | BRX domain profile. | 991 | 1049 | IPR013591 | - | |
| Seca9g04415 | 1073 | Pfam | Transcription factor BRX N-terminal domain | 825 | 860 | IPR027988 | - | |
| Seca9g04415 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 217 | 277 | IPR000408 | - | |
| Seca9g04415 | 1073 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 423 | 433 | IPR000408 | - | |
| Seca9g04415 | 1073 | Gene3D | - | 438 | 621 | IPR009091 | - | |
| Seca9g04415 | 1073 | SUPERFAMILY | PH domain-like | 27 | 104 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g04415 | Seca-Chr9 | 112721415 | 112727711 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g04415 | 984 | 1045 | Major Intrinsic Protein MIP | AT1G31880 | 46.032 | 1.06e-09 | 59.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g04415 | - | - | gmx:100805364 | 1652.11 |