Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04412 ATGGCAAGGGTTAAGGAGAAGCTATACGTCACCGTTCCGAACCTGTTTCGGTGTCCAATTTCAATGGATGTGATGAGGTCCCCCGTAAGCCTGTGCACCGGCGTCACATACGATCGCTCCAGTATCCAGCAATGGCTTGAGTCAGGTCACGACACGTGTCCCGCCACCATGCAAGTTCTTCCTTCCAAGGACTTCATCCCTAACCTCACGCTCCACCGCCTCATCCGTCTCTGGCTCCTCTCCGGCGAACCCTCCTCGCCGGAGCCACGACCTTCCGGCGAACACCTCCGCTCTCTCCTCCGTGGAATCCAAACCGGCGACGAAGACCTCACCGTTTTCCTCTCCAAGATCGCTGAATTCACCAAGGTCTCCGGCGAGAATCGCCGATTCCTCGCTAACTTCCCCGGCTTCGACTCCGCCATCGTCCGCGCTCTCGCCAGATGCTCCTCGCGGATTGACGTGTCGGAAAACGCGATCAAGGTTCTCGATTCGGTTCTCCGGGAAAAAGAAAATGCAACCGCCGCCGGCGAGAGAATCCGACGGTCGATTCTCGATGCTCGCGAAGAATGCTTCGGCTCGTTCATCTCCGTTTTGAGAAATGGCTCTTTGGAATCGAAGATTGAAGCGGTTAGGGTTTTGGAGTTTCTCGCTTGCGATTTTCAATCGAAGAGGGCGATTGCTGAAACGCAAGGCTTGTTGTCGTTGCTGACTAGCCTTATCAAGGAGGATAAATGCGAGAAGGGGCTAAACGACGCCGTTTTATCGCTGCTGGCTGTCGTTTCAGTGACTCAGTCTGTGAAAGTCGAACTCGTCTGTTCCGGAATCGTCGAGGTGGTTTCGAAGACTCTGCTGAGCGTGGCGTGCGGCAGTTCGACGGCGGAGAGGTGCCTCAGGATGCTAGCGGTGGCGGCGACGTGCGCGGAAGGGAGGGCGGCGATGGCATCGGAGCCGTCGTGCGCGGTGGCGGTGATGGAAAGGATGGCGAAGGCGCCGAAGGCCGCGGCGGAGGATGCGGTGGCGGTGCTGTGGAGCCTTTGCTGTTTGTCCGGTAACGTGAAGGTGAGGGATGATGTGGCAAAGCGAAACGGCGTGGCGGTGGTGCTCTTGGTGATGCAGAGGGGTTGGGAGGAGCACGTGAGGAGCATGTGCGTCGATTTGATTAAGGTTTTGAAGGGTGCGTCCAAGAACGGGTTGTCATTGGCACTGGGAAGCTATGACACCAAAACCACTCACATCAAGCCTTGCTGA 1248 0.5713 MARVKEKLYVTVPNLFRCPISMDVMRSPVSLCTGVTYDRSSIQQWLESGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSGEPSSPEPRPSGEHLRSLLRGIQTGDEDLTVFLSKIAEFTKVSGENRRFLANFPGFDSAIVRALARCSSRIDVSENAIKVLDSVLREKENATAAGERIRRSILDAREECFGSFISVLRNGSLESKIEAVRVLEFLACDFQSKRAIAETQGLLSLLTSLIKEDKCEKGLNDAVLSLLAVVSVTQSVKVELVCSGIVEVVSKTLLSVACGSSTAERCLRMLAVAATCAEGRAAMASEPSCAVAVMERMAKAPKAAAEDAVAVLWSLCCLSGNVKVRDDVAKRNGVAVVLLVMQRGWEEHVRSMCVDLIKVLKGASKNGLSLALGSYDTKTTHIKPC. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04412 415 SUPERFAMILY RING/U-box 8 81 - -
Seca9g04412 415 PANTHER WDSAM1 PROTEIN 11 396 IPR045185 GO:0061630
Seca9g04412 415 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Seca9g04412 415 FunFam RING-type E3 ubiquitin transferase 12 83 - -
Seca9g04412 415 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Seca9g04412 415 CDD RING-Ubox_PUB 13 65 IPR045210 -
Seca9g04412 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 86 IPR013083 -
Seca9g04412 415 Gene3D - 97 398 IPR011989 -
Seca9g04412 415 SUPERFAMILY ARM repeat 188 390 IPR016024 -
Seca9g04412 415 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04412 Seca-Chr9 112582312 112583559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04412 1 414 U-box Gene Family AT3G18710 37.037 2.25e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04412 - - gmx:100786235 555.058