Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04354 ATGGACCCGAAGTTCATCGGAAAACCGCCGCCGACGGTAGACTTAGAGCGGATGCCGGAGCGTGGGACCCACCACCGGAGGTCTCGCTCTGACACCTCCTTCCGCTTCGCCACCAACTTTGACGACCTTCTCCTCTTTGACCCTTCCGACCTCGATATCTCCAACCTACCTCTCCCGTCCCCCGCCGTTGCCGGCGGGTCCACCGGCAGCGTCGTTCCGATGGCCGTCGATTCGGACGACTCCAGCGGCCTGCATGGTGCGGCGGGTCCACCCTCCGGTCACCTCCGGAGCTTGTCCGTGGACTCTGACTTCTTCGACAGCCTCGGGTTCTCCGGAGCCAGTGACGAGAGAATCGGCGGGAAGGTCGCCGGCGAGAGGAGGGTGAGCCACCACCGGCACAGCAATTCGATGGATGGATCCTCAACGACGTCGTTTGAGGCTGACTCTTCTATGATGGACGGTGTGAAGAAAGCCATGGCACCTGATAAGCTCGCTGAACTTGCTCTTATTGATCCCAAGAGAGCTAAAAGGATTCTTGCTAATAGGCAATCTGCTGCTCGATCAAAGGAAAGGAAAATTCGCTATACGAGTGAGTTGGAGAGGAAGGTGCAGACTCTTCAGACTGAAGCAACTAACCTCTCTGCAAAGCTAACTATGCTTCAGAGAGACACTACAGACTTGACTGCTGAGAATAAGGAACTCAAATTGCGGTTAGAGGCTTTGGAACAAGAAGCACAGCTTAGAGAAGATCTCAATGAGGCATTAAAAGAAGAACTGCAGCGCCTTAGGGCACAAAAGAATCATTTGAGTGCTATGAGTGGTAATCCTTCTTTTGGTGGCATGTTCTCTCAATTGGCTTCCCAGTTCGCCATGCAACAGTTGAGTAATCCTTCACCCCAGCAGGCACAGCCTGGCATGCCACCGGCTCCTCCTCGTTCTGACCATCCTTTCAATGGACAGAACCACCCTAACTTCATGGACTTCAATAAGAAGAAGTAG 999 0.5375 MDPKFIGKPPPTVDLERMPERGTHHRRSRSDTSFRFATNFDDLLLFDPSDLDISNLPLPSPAVAGGSTGSVVPMAVDSDDSSGLHGAAGPPSGHLRSLSVDSDFFDSLGFSGASDERIGGKVAGERRVSHHRHSNSMDGSSTTSFEADSSMMDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAKLTMLQRDTTDLTAENKELKLRLEALEQEAQLREDLNEALKEELQRLRAQKNHLSAMSGNPSFGGMFSQLASQFAMQQLSNPSPQQAQPGMPPAPPRSDHPFNGQNHPNFMDFNKKK. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04354 332 CDD bZIP_plant_RF2 174 223 IPR044759 GO:0003700|GO:0006355
Seca9g04354 332 MobiDBLite consensus disorder prediction 14 31 - -
Seca9g04354 332 Gene3D - 172 226 - -
Seca9g04354 332 MobiDBLite consensus disorder prediction 289 332 - -
Seca9g04354 332 SMART brlzneu 169 233 IPR004827 GO:0003700|GO:0006355
Seca9g04354 332 MobiDBLite consensus disorder prediction 120 134 - -
Seca9g04354 332 MobiDBLite consensus disorder prediction 1 31 - -
Seca9g04354 332 Pfam bZIP transcription factor 173 231 IPR004827 GO:0003700|GO:0006355
Seca9g04354 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 171 234 IPR004827 GO:0003700|GO:0006355
Seca9g04354 332 MobiDBLite consensus disorder prediction 120 146 - -
Seca9g04354 332 SUPERFAMILY Leucine zipper domain 173 225 IPR046347 GO:0003700|GO:0006355
Seca9g04354 332 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 13 304 - -
Seca9g04354 332 Coils Coil 196 272 - -
Seca9g04354 332 FunFam Transcription factor VIP1 172 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04354 Seca-Chr9 110857448 110861474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04354 9 331 bZIP Transcription Factor Family AT1G43700 47.727 1.47e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca9g04354 bZIP_1 5.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04354 K20557 - gmx:778142 430.639