LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g04342	ATGGTGCCCTTTGTTTTTCCTCTTCTATTCTTCTCATTCTTAGTGGGGAATTCTAAAGGACAACTCCAAGTGGGTTTCTACTCCAACACATGTCCTCAAGCAGAGCCCACTGTTCGTGCTGTTGTTAGAGATGTTGTTCTCTCTGACCCCAACATGGCTGCTGTCTTGCTCAGGCTTCAGTTTCATGACTGCTTTGTTGAGGGATGTGATGGTTCAATTCTGATCAACAATGGTCCACAATCAAAGAAACTATCATTTGCACATCAAGGGGTTAGGGGGTTTGGAGTGATAGAAAGAGTCAAGGCACAATTGGAAGCATCTTGCCCAGGAGTGGTTTCTTGTGCAGACATAGTGGCATTGGCATCCTGA	369	0.4526	MVPFVFPLLFFSFLVGNSKGQLQVGFYSNTCPQAEPTVRAVVRDVVLSDPNMAAVLLRLQFHDCFVEGCDGSILINNGPQSKKLSFAHQGVRGFGVIERVKAQLEASCPGVVSCADIVALAS.	123

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g04342	122	ProSitePatterns	Peroxidases active site signature.	53	64	IPR019794	GO:0004601
	Seca9g04342	122	PRINTS	Haem peroxidase superfamily signature	112	122	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	PRINTS	Haem peroxidase superfamily signature	53	67	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	PRINTS	Plant peroxidase signature	111	121	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	PRINTS	Plant peroxidase signature	55	75	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	PRINTS	Plant peroxidase signature	92	105	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	PRINTS	Plant peroxidase signature	31	50	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	Pfam	Peroxidase	38	121	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	SUPERFAMILY	Heme-dependent peroxidases	21	122	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Seca9g04342	122	Gene3D	-	21	122	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g04342	Seca-Chr9	110060920	110061950	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g04342	16	122	Peroxidase	AT4G25980	69.159	7.94e-51	160

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g04342	K00430		-	gmx:547549	191.815

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