Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04341 ATGCAGGCAAATGGACCAGGATACCAAGTTCCAACAGGGAGGAGAGAAGGGTTGGTTTCTAATCTTTCACTTGCAGCTGATATGCCAGATGTTGATGATTCAATTCAGCTACTCAAGGACAAGTTTCTGAAGAAGGGTCTCACAGAGAAAGACCTTGAGAAAGTTGGGGTTAATGTGTCTGTTGTTTATGGTGTGATGCCTCCTGATGCTTATCGTGCTGCCAAAGCTACTGCCTCTACTGATCAGAAGCCTGGTCCTATCCCTTTTTTTGCAGCTGGAATCAGCTCTGTTTTACATCCGAAGAACCCATTTTCCCCAACCTTACATTTCAATTATTGCTATTTTGAAACCGATGCTCCTAAAGTTCTTTATGTTGCTGTTTTTTGGGCCTTGGGGTTCTTTTTTTGTGTACTTGGAAGGGATGCAATCAATGTCATAGCATGTGAAGGGGCAGAGAGGGTTGAAAGGCCAGAGACTTACAAGCAGTGGCAGGTTAGGAACCGGAGAGCAGGGTTCAAGCAACTTCCATTGCCCCCAGAACTCTTGAATAGAGTAAAAGAAATGGTGAAGGAAGTATCATAA 582 0.4399 MQANGPGYQVPTGRREGLVSNLSLAADMPDVDDSIQLLKDKFLKKGLTEKDLEKVGVNVSVVYGVMPPDAYRAAKATASTDQKPGPIPFFAAGISSVLHPKNPFSPTLHFNYCYFETDAPKVLYVAVFWALGFFFCVLGRDAINVIACEGAERVERPETYKQWQVRNRRAGFKQLPLPPELLNRVKEMVKEVS. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04341 193 ProSiteProfiles GRAS family profile. 1 193 IPR005202 -
Seca9g04341 193 ProSiteProfiles Plant heme peroxidase family profile. 1 116 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca9g04341 193 SUPERFAMILY Coproporphyrinogen III oxidase 52 120 IPR036406 GO:0004109|GO:0006779
Seca9g04341 193 Pfam Coproporphyrinogen III oxidase 51 121 IPR001260 GO:0004109|GO:0006779
Seca9g04341 193 PRINTS Coprogen oxidase signature 91 115 IPR001260 GO:0004109|GO:0006779
Seca9g04341 193 PRINTS Coprogen oxidase signature 43 64 IPR001260 GO:0004109|GO:0006779
Seca9g04341 193 SUPERFAMILY Heme-dependent peroxidases 2 52 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca9g04341 193 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 50 121 IPR001260 GO:0004109|GO:0006779
Seca9g04341 193 Gene3D Coproporphyrinogen III oxidase, aerobic 41 134 IPR036406 GO:0004109|GO:0006779
Seca9g04341 193 Pfam GRAS domain family 137 192 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04341 Seca-Chr9 110043299 110044307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04341 3 52 Peroxidase AT4G25980 70.000 1.21e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca9g04341 Coprogen_oxidas 3.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04341 K00228 - pvy:116145631 131.724