Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04305 ATGACCTTGCTAACGGTGGCGCACCAAAGAGGTTCAGGGGAGTTCATCAGATTCACGGCGCAGCATGGCGGCGGTGATGGTGATGGTGGTAGTTCTGAGGCATCACAGTCACTAGGATTCAACCAACATGGTGAGGTGACAATGCAGAGTTCTTCTATGGTTTCAGGGTATAGCAGGGCTAGAGAGTTAACAGAAATGGTTTCAGCTCTTACTCATGTGGCATCATCAGGGAGTAGTAGCACTGAATGGGTACAAGGAAGTGGTTTTCCTGTGATGTCTGGTGGATTAGGACATGGATCTTTATCTTCTTCTTCTGATAACCTTGTTTTGCCATCTGGCTCTCTTTCTGGTTCATGGATTGGCCACAAAAGAGGGCGTGAAGAAAGTGCTTCTCATCACTTGTTACAACAACAAGCTGTTCCTAGACTCTTCAGAACTGTTGGTGATATCATGGTACCTTCTCAAGGAGAGTCATCTTCAGCAGTGACAGAAGAATCTTCCACCACCACCACAGCCGCCGTGACCGCAGCCGCCACGGCAGCGGCTGAAGAGGGTGGAGAGAGGAGGAGGAGGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCTGAAATCCGAGATCCACATAAAGCAGCAAGAGTTTGGCTTGGGACATTTGATACAGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTGAGGTTCAGGGGAAGCAGAGCAAAGCTCAATTTCCCTGAAAATGTTAGAGCAGTTCCACCACAAGTTCAACCTTTTCCAGCCACCAGGATCACCAATTCTGAAACCTCAACAACTCAATTCCTCCCTCTCCGGCCACCGCCACCGCAACAACAGCTACCATTTCAGGGTCCCTCTGACTTGATCAGAGACTACTTGGGATATTCTCAACTTCTGCAGAGTTCTGGTGACTTTCAACATCAACAACAACAGCAACAACCTTCTAGTTTGCTTCAGCAGTGGTACTATAATTCACAATTGGCTGCACTTCAATCACCTTCTTTGTTATCATCAACGCCCTCTTTTTCTTCTTCTCTATCAACACCAACAACAACAACAGCATCGTTTTCTCAACTTTCCTCTGCTTCATTTCCCCTGTTTTCTAGCCAACAAATGGGCCTTTTCCGGCAGCCGGAAAACCGCCCTCGTGGCGGCGGAGGGTCAGAGTTTCCGCCGTCAACATGGTCAGATACCAGTGGCCATCCACCACCTTATGGTTGA 1245 0.4876 MTLLTVAHQRGSGEFIRFTAQHGGGDGDGGSSEASQSLGFNQHGEVTMQSSSMVSGYSRARELTEMVSALTHVASSGSSSTEWVQGSGFPVMSGGLGHGSLSSSSDNLVLPSGSLSGSWIGHKRGREESASHHLLQQQAVPRLFRTVGDIMVPSQGESSSAVTEESSTTTTAAVTAAATAAAEEGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRAVPPQVQPFPATRITNSETSTTQFLPLRPPPPQQQLPFQGPSDLIRDYLGYSQLLQSSGDFQHQQQQQQPSSLLQQWYYNSQLAALQSPSLLSSTPSFSSSLSTPTTTTASFSQLSSASFPLFSSQQMGLFRQPENRPRGGGGSEFPPSTWSDTSGHPPPYG. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04305 414 PANTHER DNA-BINDING DOMAIN 163 328 IPR044808 GO:0003700|GO:0009873
Seca9g04305 414 SMART rav1_2 191 254 IPR001471 GO:0003700|GO:0006355
Seca9g04305 414 MobiDBLite consensus disorder prediction 379 414 - -
Seca9g04305 414 SUPERFAMILY DNA-binding domain 191 249 IPR016177 GO:0003677
Seca9g04305 414 Gene3D AP2/ERF domain 190 250 IPR036955 GO:0003700|GO:0006355
Seca9g04305 414 Pfam AP2 domain 191 240 IPR001471 GO:0003700|GO:0006355
Seca9g04305 414 MobiDBLite consensus disorder prediction 271 292 - -
Seca9g04305 414 FunFam Ethylene-responsive transcription factor 2 190 249 - -
Seca9g04305 414 ProSiteProfiles AP2/ERF domain profile. 191 248 IPR001471 GO:0003700|GO:0006355
Seca9g04305 414 PRINTS Ethylene responsive element binding protein signature 214 230 IPR001471 GO:0003700|GO:0006355
Seca9g04305 414 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700|GO:0006355
Seca9g04305 414 CDD AP2 199 250 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04305 Seca-Chr9 107900230 107902249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04305 183 264 AP2-EREBP Transcription Factor Family AT2G33710 73.171 1.77e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca9g04305 AP2 8.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04305 - - gmx:100804843 392.119