Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04272 ATGGTTGAGAAGGGCAAGGGTAGGAAGGAAGAGGTCGTTACCAGAGAGTACACCATCAACCTCCACAAACGCTTACATGGCTGCACATTTAAGAAGAAAGCTCCTAATGCAATTAAGGAGATAAGGAAGTTTGCCCAGAAAGCAATGGGGACCAATGATGTGAGAGTGGATGTGAAGCTAAACAAGTATGTTTGGAGCCAGGGTATCAGAAGTGTCCCAAGGAGGATTAGGGTACGCATTGCTCGCAAGAGGAACGATGATGAGGATGCAAAGGAAGAGCTATACTCCCTTGTTACCGTCGTCGAAATCCCTAAGGAAGAGCTCAAAAGTTTGGGCACCAAGGTTATTGATGATGAGGATTGA 363 0.4601 MVEKGKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKSLGTKVIDDED. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04272 120 Gene3D - 9 120 IPR023621 -
Seca9g04272 120 ProSitePatterns Ribosomal protein L31e signature. 54 68 IPR020052 GO:0003735|GO:0005840|GO:0006412
Seca9g04272 120 PANTHER 60S RIBOSOMAL PROTEIN L31 2 119 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca9g04272 120 SUPERFAMILY Ribosomal protein L31e 11 92 IPR023621 -
Seca9g04272 120 FunFam 60S ribosomal protein L31 6 119 - -
Seca9g04272 120 Pfam Ribosomal protein L31e 11 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca9g04272 120 CDD Ribosomal_L31e 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca9g04272 120 SMART Ribosomal_L31e_2 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04272 Seca-Chr9 104336489 104338780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04272 2 120 Cytoplasmic Ribosomal Protein Gene Family AT2G19740 82.353 2.21e-69 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04272 K02910 - gmx:100305583 217.238