Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04268 ATGCTGGGTGAGAATCTTTACCCCCTTGTGGAGCAGTTAGAGCCTGATAATGCTGCTAAAGTGACAGGGATGCTTCTGGAAATGGACCAGACTGAAGTTCTACACTTGCTCAAGTCACCAGACGCCTTGAAAGCAAAGGTGGCTGAGGCAATGGACGTCCTTAGGGATGTTACACAGCAGCAACAGATTAGCAAAACTGGTTAG 204 0.4804 MLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLKSPDALKAKVAEAMDVLRDVTQQQQISKTG. 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04268 67 Gene3D - 1 61 - -
Seca9g04268 67 SMART poly_2 1 57 IPR002004 GO:0003723
Seca9g04268 67 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 59 IPR002004 GO:0003723
Seca9g04268 67 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 2 60 - -
Seca9g04268 67 Pfam Poly-adenylate binding protein, unique domain 1 54 IPR002004 GO:0003723
Seca9g04268 67 SUPERFAMILY PABC (PABP) domain 1 62 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04268 Seca-Chr9 104194458 104194661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04268 1 61 Eukaryotic Initiation Factors Gene Family AT1G49760 88.525 9.92e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04268 K13126 - zju:107427042 114.005