Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04250 ATGCAGCTGAGTTGGTTAAAAAATAAAGCAATCTTTTCAATAAAAAAAACGCTCCGAATTCTGTCTAAGATTATTACGGTTGGTCATATTCGACACCGGAGCCTTGTGCTTCTGCTAGCTATTGTGTCTGGGTTGGATGGCCACTGCCTTGTTTATGAGTTGATGAATGATGGAAATTTGCAGGATATGTTGGACAAAAGTAAAAGGGGTGCAAGGGAGTTGGATTGGTTTTTAACGCACGAGATTGCACTTGGTGTAGCTGCTGGCTTTGAATACTTTCTCATTAGTGGCAGTCCATAA 300 0.41 MQLSWLKNKAIFSIKKTLRILSKIITVGHIRHRSLVLLLAIVSGLDGHCLVYELMNDGNLQDMLDKSKRGARELDWFLTHEIALGVAAGFEYFLISGSP. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04250 99 Gene3D Transferase(Phosphotransferase) domain 1 2 94 - -
Seca9g04250 99 Pfam Protein tyrosine and serine/threonine kinase 17 93 IPR001245 GO:0004672|GO:0006468
Seca9g04250 99 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 92 - -
Seca9g04250 99 SUPERFAMILY Protein kinase-like (PK-like) 13 92 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04250 Seca-Chr9 103534014 103534313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04250 15 99 Receptor kinase-like Gene Family AT2G31880 52.941 1.52e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca9g04250 PK_Tyr_Ser-Thr 3.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04250 - - pop:7458077 94.7449