Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04249 ATGTCTGAGATTATTACGGTTGGTCATATTCGACACCGGAACCTTGTGCTTCTGCTAGCTAATGTGTCTGGGTTGGATGGCCACTGCCTTGTTTATGAGTTGATGAAGAATGGAAATTTGCAGGATATGTTGGACAAAAGCGCTGCTACATTGGCTTTCTTAATGTTGATTGTTGGGTTTGTGGTTGGAGCTCCAGCTGGGACTCTTTTTGGGTTCATATTTTACTTGTTGGTCAAGTTGGCTTTGGGTTTGATCAATGGAGAAGCGAGATAG 273 0.4322 MSEIITVGHIRHRNLVLLLANVSGLDGHCLVYELMKNGNLQDMLDKSAATLAFLMLIVGFVVGAPAGTLFGFIFYLLVKLALGLINGEAR. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04249 90 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Seca9g04249 90 Pfam Protein tyrosine and serine/threonine kinase 1 53 IPR001245 GO:0004672|GO:0006468
Seca9g04249 90 SUPERFAMILY Protein kinase-like (PK-like) 2 48 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04249 Seca-Chr9 103533246 103533820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04249 2 55 Receptor kinase-like Gene Family AT2G31880 59.259 2.82e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca9g04249 PK_Tyr_Ser-Thr 9.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04249 - - aip:107629358 65.4698