Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04238 ATGAGAAAACAAGCAGATCTATCTTCACCTTCCTTCACTTGTGATTGGACTTACGATGTGTTTCTCAATTTTAGAGGTGAAGACACTCGGAACAACTTTACTGGCAATCTTTACAACTCTCTGCATCAAAGGGGAATCCACACCTTCATTGATGATGAAAACCTTAGAAGAGGGGAAGAAATCAAGCCAGCTCTTATCAAAGCCATTCAAGAATCCAGGACTGCCATCATGGTTTTCTCTGAAAACTATGCTTACTCAACCTATTGCTTGGATGAACTTGTCACAATCCTTGACCACTTAAAAGCACAAGGGCGATTAGTTTGGCCAATCTTTTATGATGTTGATCCATCAGATGTTAGACATCAAAAGGGGAGCTATGCAAATGCTTTGGCAAAACTTGAAGAAAGGTTTCAAGATGACAAGGGGAAGGTGAAAAAATGGAGAGAGGCTTTATATGAAGCAGCTAACCTGTCTGGTTGGCATTTCTTCAAACAACCTGAATACAAGTTTATTAAAAGAATTGTTGATGAGGTTTCCAGAAAGCTCAATCACACTCCATTGCATGTTTCTGATAACCCGGTTGGGCTAGAGTCTCGATTGCTGCAAGTGAAATCTCTTCTTCAACTTGGATCTAGTGAGGGTGTCATCATGGTAGGGATTTATGGGGTTGGTGGAATAGGTAAATCAACAATTGCACGTGCTTTGTGTAACTTGATTGCAAATCAATTTGATGGCTTTTGTTTTCTTGCTGACATTAGAGAAAAAGCAATTACTAGTCATGGCCTTACACAACTCCAAGAAACACTACTATCTAAAATACTTGGAGAGAAAGATATTAAAATTGAAGATGTCAATGAAGGAATTCCACTCATAAAATGGAGGCTCCAACGAAAGAAGGTTCTTTTGATTCTTGATAATGTGGACGACCTGGACCAATTAAAGGCAATTGCTGGAGGATGTGATTGGTTTGGTTCAGGTAGCAGGATCATTATGACATCTAGAGACAAGCATTTGCTAGCTACTCATGGAGTCACAAAATTTTATGAGGTTCAAGAGTTAAACAAAAAGCAGGCTCTTGAATTGTTAAGTTGGAATGCCTTCAAAAGTAACAAAGTCGATCCAAGTTATGTGAACATTTCAAACCGTGTCCTATCTTATGCTGGTGGCCTACCTTTGGCATTGGAAGTAATTGGTTCTTTTTTGTATAGTAAAGGAATTGATGAATGGAACTCTTTGTTAGATCAATATGAATGTGTTCCTAATAGCAAGGTTGATAAAATACTTAAAGTAAGTTATGATGGATTGGAGGAAAACGAGAAAAACGTTTTCCTTGACCTTGCTTGTTTCTTCAACAATTCCCATGTATCAGGTGCCAAACGTATTCTACATGTTCGTGGTTTGCATCCAGAAATTGGTATTCAGATTTTGGTTGACAGATCTCTTATAAAGATTGATGATTCTGATTATGTGAGAATGCATGATTTGATTCGAGACATGGGTAGAGAAATTGTTAGACAGGAATCAAAAACAGAGCCCGGTGAACGAAGTAGGTTGTGGTTTGATGAGGACATCATACATGTATTGCAAGAAGATACAGGAACCAATAAAATTGAAGTCATAATGTTCTCCACACACGGAGTAAAGGAAGTGCATTACAATGAAAATGCATTCAAGAAAATAAGGAATCTCAAAGTTCTTATCTTTGGTACTGGTGCATACTTACCACACAAGGCATACCCTTTTTATGTTTTGCAGTGGTTTGACCCTTTGAGTTTTATGTATTTTGGAAGCTGTGGATTCTTAAGGAAAGTACCTGACCTTTCTGGACTCCCAAATTTAAGGGTATTGTGTGTTGACTACTGCAGTAATTTAATTGAAATCCATGATTCAATTGGATTTCTTCCTAAACTCATTTTATTTAGTGCTCAAGTGTGCATCAATCTCCAAACTTTTGGACGTGCCATCTGGTTGCCATCTCTTGAGACTCTTGATCTAAGTTGGTGCACGAGTCTTAAGAGTTTTCCTAAAGTAGTAGGAAAGATGGAAAATATTCGACATGTTTATTTGGACGGTACTATCTTACTACAAGAATTGCCATTTTCAATAAAAAATCTCATTGGGCTTGAACGATTGTACATGCGTCGATGCAAAAATCTCAAGCTTCCAAGTAGCATAGGATCATTGCCGAAACTTACCACAATATATTTGGATAGGGGATATGTATTAGTTGTACCGAACGAAGTAAGAGAAAAAGTCTTTTTTTACTTTTAG 2271 0.376 MRKQADLSSPSFTCDWTYDVFLNFRGEDTRNNFTGNLYNSLHQRGIHTFIDDENLRRGEEIKPALIKAIQESRTAIMVFSENYAYSTYCLDELVTILDHLKAQGRLVWPIFYDVDPSDVRHQKGSYANALAKLEERFQDDKGKVKKWREALYEAANLSGWHFFKQPEYKFIKRIVDEVSRKLNHTPLHVSDNPVGLESRLLQVKSLLQLGSSEGVIMVGIYGVGGIGKSTIARALCNLIANQFDGFCFLADIREKAITSHGLTQLQETLLSKILGEKDIKIEDVNEGIPLIKWRLQRKKVLLILDNVDDLDQLKAIAGGCDWFGSGSRIIMTSRDKHLLATHGVTKFYEVQELNKKQALELLSWNAFKSNKVDPSYVNISNRVLSYAGGLPLALEVIGSFLYSKGIDEWNSLLDQYECVPNSKVDKILKVSYDGLEENEKNVFLDLACFFNNSHVSGAKRILHVRGLHPEIGIQILVDRSLIKIDDSDYVRMHDLIRDMGREIVRQESKTEPGERSRLWFDEDIIHVLQEDTGTNKIEVIMFSTHGVKEVHYNENAFKKIRNLKVLIFGTGAYLPHKAYPFYVLQWFDPLSFMYFGSCGFLRKVPDLSGLPNLRVLCVDYCSNLIEIHDSIGFLPKLILFSAQVCINLQTFGRAIWLPSLETLDLSWCTSLKSFPKVVGKMENIRHVYLDGTILLQELPFSIKNLIGLERLYMRRCKNLKLPSSIGSLPKLTTIYLDRGYVLVVPNEVREKVFFYF. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04238 756 PRINTS Disease resistance protein signature 655 671 - -
Seca9g04238 756 PRINTS Disease resistance protein signature 217 232 - -
Seca9g04238 756 PRINTS Disease resistance protein signature 294 308 - -
Seca9g04238 756 PRINTS Disease resistance protein signature 387 401 - -
Seca9g04238 756 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Seca9g04238 756 Gene3D Ribonuclease Inhibitor 533 748 IPR032675 -
Seca9g04238 756 Gene3D - 14 184 IPR035897 -
Seca9g04238 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 446 IPR027417 -
Seca9g04238 756 Gene3D - 432 503 IPR036388 -
Seca9g04238 756 SMART till_3 17 157 IPR000157 GO:0007165
Seca9g04238 756 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Seca9g04238 756 Pfam NB-ARC domain 203 431 IPR002182 GO:0043531
Seca9g04238 756 Pfam TIR domain 18 188 IPR000157 GO:0007165
Seca9g04238 756 Coils Coil 130 150 - -
Seca9g04238 756 Gene3D - 185 347 IPR027417 -
Seca9g04238 756 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Seca9g04238 756 Gene3D - 352 431 IPR042197 -
Seca9g04238 756 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 724 IPR044974 GO:0006952
Seca9g04238 756 SUPERFAMILY L domain-like 491 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04238 Seca-Chr9 103163695 103166836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04238 10 736 WRKY Transcription Factor Family AT4G12020 31.559 2.15e-86 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04238 - - gmx:100802408 854.358