Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04224 ATGCCTCTGTACCCATTCATTGACTATGCTGGAATACCAATTGAAGAGGATAGAGCAACAAGTGCTTCCAAAAGTCACAGTCAAGCAGAGAAAAGGCGCAGAGATAGGATCAATGCACAGCTTGCAACTCACAGAGAACTGATTCCAAAGTCTGATAAGATGGACAAGGTAGCTTTATTAGGGAGTGTGATAGACCAAGTGAAGGATCTAAAGAGAAAAGCAATGGATGTTAGCAGAGCCATCACAGTTCCATCTGCAAAGCTTCTGTTTGCTGTGATGATAGACCAAAATTGTTCTCTGAACTCATTCAAGTTCTCAGAAGAGTTAAGATTAGGAAAATTACTTCCACTCATGTACATCTTTTTATTAACAGTTATGCATACATCTTATAAGTAA 396 0.3889 MPLYPFIDYAGIPIEEDRATSASKSHSQAEKRRRDRINAQLATHRELIPKSDKMDKVALLGSVIDQVKDLKRKAMDVSRAITVPSAKLLFAVMIDQNCSLNSFKFSEELRLGKLLPLMYIFLLTVMHTSYK. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04224 131 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 21 70 IPR011598 GO:0046983
Seca9g04224 131 PANTHER TRANSCRIPTION FACTOR BHLH30 15 86 IPR045847 GO:0003700|GO:0006355
Seca9g04224 131 Pfam Helix-loop-helix DNA-binding domain 24 70 IPR011598 GO:0046983
Seca9g04224 131 Gene3D - 14 79 IPR036638 GO:0046983
Seca9g04224 131 SMART finulus 27 76 IPR011598 GO:0046983
Seca9g04224 131 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 76 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04224 Seca-Chr9 102402612 102404735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04224 4 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 56.164 3.90e-18 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g04224 HLH 4.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04224 - - adu:107478510 123.25