Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04219 ATGTTAAAAGTTGAAAAAATGGTTGACACAAAGACAAGCACACTGTCAGGTGCCCAACAGAGTATCCCTGTATCTGGATATGTGGTTGTTGCAATCAAGAAAATTGAGCTACCAACAATTAAAGGAGCAGAGGGGGAATGCGAATTCCGAGTAAAAGTTGACATATTGCGCAGGTTTGACCACCCAAATCTTGTTTCTTTGATTGGGTACTGTGCTGATGGGAAGCATAGATTCCTAGTGTATGAATATATGTTTAATGGGAACCTGCAAGATCATTTGAATGGAATCAGGGAAAGAAAAATGGATTGGCCTCTGAGACTCAAAGTGGCATTGGGAGCTGCAAAAGGTCTTGCTTATCTCCAGTCAAGTTCTTGTGTTGGAATTCCTATTTTTCATAGAGATTTCAAATCCACCAACATTCTTTTAATTAATTCCAATTTTGAAGAAAAGATATCTGATTTTAGGCTTGCCAAACTAATTCTAGAAGGACAGGAGACACGTGACTGCCAGAGTACTTGGGCAAATCAGAAGCTATTCCCTGTGATTTGGCCTGGAGATACAGACCAAAAGCCTCGTGGTTGGGTTTTTCCAAACAGTGGAAGGCTTTTAAAAATTGGAGTACCAAAAGTTAACCTTTTGCCTTATGCAGTCCCTTATAAGTTTATCCCATATGGGGATGGTAAGAACAATCCTAGTATCACTGAGCTTGTCTGTCTAATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAAATGGTGGATTTTACTCAGCCATATATTGAATCTGATCTAGTGGTAGTAGCCCCAGTTAAGGAGTCAGAAACCAGTGCTTTGGCCTTTTTGGCCCCATTTACACCAAGGATGTGGCTTGTCACAGCTATCTTTTTCATATTAGTGGGAACTGTTGCTTGGATTTTGGAGCATAGGGTGATGATGAGTTTAGGGGACCACCCAAAAAACAAGTAG 993 0.4048 MLKVEKMVDTKTSTLSGAQQSIPVSGYVVVAIKKIELPTIKGAEGECEFRVKVDILRRFDHPNLVSLIGYCADGKHRFLVYEYMFNGNLQDHLNGIRERKMDWPLRLKVALGAAKGLAYLQSSSCVGIPIFHRDFKSTNILLINSNFEEKISDFRLAKLILEGQETRDCQSTWANQKLFPVIWPGDTDQKPRGWVFPNSGRLLKIGVPKVNLLPYAVPYKFIPYGDGKNNPSITELVCLITTGEFDGAVGDIAITTERTKMVDFTQPYIESDLVVVAPVKESETSALAFLAPFTPRMWLVTAIFFILVGTVAWILEHRVMMSLGDHPKNK. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04219 330 Pfam Bacterial extracellular solute-binding proteins, family 3 232 283 IPR001638 -
Seca9g04219 330 FunFam Glutamate receptor 199 286 - -
Seca9g04219 330 SUPERFAMILY Protein kinase-like (PK-like) 28 168 IPR011009 -
Seca9g04219 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca9g04219 330 Gene3D - 210 285 - -
Seca9g04219 330 Pfam Protein tyrosine and serine/threonine kinase 28 170 IPR001245 GO:0004672|GO:0006468
Seca9g04219 330 PANTHER OS01G0750732 PROTEIN 29 166 - -
Seca9g04219 330 Gene3D - 286 329 - -
Seca9g04219 330 Gene3D Transferase(Phosphotransferase) domain 1 14 181 - -
Seca9g04219 330 SUPERFAMILY Periplasmic binding protein-like II 180 302 - -
Seca9g04219 330 ProSiteProfiles Protein kinase domain profile. 1 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04219 Seca-Chr9 102092646 102096432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04219 170 318 Ion Channels AT3G51480 51.136 5.92e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Seca9g04219 PK_Tyr_Ser-Thr 5.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04219 - K05387 gmx:100793320 244.973