Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04205 ATGGGAAGACATTCTTGCTGCTACAAGCAGAAACTTCGTAAAGGCCTATGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCATCAAACATGGTCATGGATGTTGGAGCTCCGTTCCAAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGATTGAGATGGATAAATTTAGTAAATTTAATGCATTAA 198 0.4091 MGRHSCCYKQKLRKGLWSPEEDEKLLNYIIKHGHGCWSSVPKLAGLQRCGKSCRLRWINLVNLMH. 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04205 65 Gene3D - 11 63 - -
Seca9g04205 65 SMART sant 13 63 IPR001005 -
Seca9g04205 65 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Seca9g04205 65 FunFam MYB transcription factor 11 63 - -
Seca9g04205 65 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca9g04205 65 CDD SANT 17 61 IPR001005 -
Seca9g04205 65 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca9g04205 65 PANTHER MYB DOMAIN PROTEIN 55 1 60 - -
Seca9g04205 65 SUPERFAMILY Homeodomain-like 7 61 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04205 Seca-Chr9 101335914 101336245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04205 1 59 MYB Transcription Factor Family AT1G09540 93.220 5.45e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g04205 Myb_DNA-binding 7.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04205 K09422 - csav:115719451 134.42