Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04196 ATGCAGCTGGCCGGATACTCAAGTGTGGTGGAGATCTCCTCCCCTAATAAGCCCGTGATGGCGGTGACGGTGGCGGCACGGGCGGCGGAAGCAGCTTCACATGAAGGTGTCAACGGTGGAGACATGATTGGTATGGATGTAGATGTAAATTCAGGTGAAGAAAGAGGAAAGGAAGAAGAAGGAAGAGATGAAGGTGATAACAATAAGATCAGTTTTGGAGGAAACCGGTGGCCCCGCCAAGAAACGTTGGCTCTCTTGAAGATAAGGTCAGATATGGATGCAGTGTTTCGAGATTCAACTCTAAAAGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGCAGCGCTTGGATATAAACGAAGCTCAAAGAAGTGCAAGGAAAAATTTGAGAACGTGTACAAGTACAATAAGAGAACCAAAGAAAACAGAAGTGGCAAATCACATGGGAAAACCTATAGATTCTTTGATCAATTACAAGCCCTTGAGAATCAACTCACTGTCTCTAATTCACAACCTGATTTGGCAACAAAACACACATTGCCACCAAAACCAAATATTGAAACCACAACCACTTTTCCATCCCCAAACCCTACACTCATTTCTCCTTCACCACCAACCAATGTCAACAATAATGATGTCCCACATTCCTTGCCCAACAACATGAACGTTTTCTCAACCGCTTCAACTTCTTCTTCAACCGCTTCCGATGAAGACTTGGAAGGGAGACATAAGAAGAAGAGGAAGTTTTGGAAGGATTACTTTAGGAGGCTCACTAGGCAGGTTTTGTATAAGCAAGAGGAAATGCAAATGAAGTTCTTGGAAGCTATTGAGAAACGAGAGAGAGAATGGGTGGAACAACAAGATTGTTGGAGGATGCAAGAAATGGCGAGGATTAATAAGGAACATGAGATACTCATTCAAGAACGATCAACAGCTGCGGCTAAAGATGTTGCTGTTATTGCAATGTTGCAAAAGTTGTGTGGCAATGAGAATCCTACACAACTTGAAGGTGGCAATTCTCTTCCACAACAACAACCACCACCTCCACAACCAGTATCACAGGTAGAGCCACAACAACAGGAGCAACCACCACATCCACAACAACCACCACAAACATTGGTGGCAAGCAACAATTTTGAAATCAAGAGAATGAACATTAATGGTGGCAGTGCTACAAGTCCAATAGTAAGCTCTTCTTCTTCTTCTAGGTGGCCAAAGGCAGAAGTTCATGCTCTGATAAGGCTGAGGACATGTCTTGAATCCAAGTTTCATGAGAATGGACCAAAAGCTCCACTATGGGAGGAGCTATCAGCTGGAATGCATAGGCTTGGCTACAACCGAAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAATGAGGCAAAGTAACAAACAAAGACGTGAGGATAGTAAGACTTGTCCTTATTACCATGAGCTTGAAGCTCTATACAAAGAAAAGGGCAAAATCCAGAACCCCTTTGGCATTGCATTGCATAATTTGAAACCGAATGAGATGATGGAGCCATTGATGGTGCAACCCGAACAGCAATGGAGGCCTCCACCTCAATATGAACAACAGACATTGGAAGAGAGGGAGATTAATGAAAAAGAAGATGAAGAAGAAGAATATAATGATGATGGTGTTGAAGAAGAAGGTGAATCAGGAGATAATATTGTGGAAGATGAAGGAACAAGCTAG 1719 0.4287 MQLAGYSSVVEISSPNKPVMAVTVAARAAEAASHEGVNGGDMIGMDVDVNSGEERGKEEEGRDEGDNNKISFGGNRWPRQETLALLKIRSDMDAVFRDSTLKGPLWEEVSRKLAALGYKRSSKKCKEKFENVYKYNKRTKENRSGKSHGKTYRFFDQLQALENQLTVSNSQPDLATKHTLPPKPNIETTTTFPSPNPTLISPSPPTNVNNNDVPHSLPNNMNVFSTASTSSSTASDEDLEGRHKKKRKFWKDYFRRLTRQVLYKQEEMQMKFLEAIEKREREWVEQQDCWRMQEMARINKEHEILIQERSTAAAKDVAVIAMLQKLCGNENPTQLEGGNSLPQQQPPPPQPVSQVEPQQQEQPPHPQQPPQTLVASNNFEIKRMNINGGSATSPIVSSSSSSRWPKAEVHALIRLRTCLESKFHENGPKAPLWEELSAGMHRLGYNRNAKRCKEKWENINKYFKKMRQSNKQRREDSKTCPYYHELEALYKEKGKIQNPFGIALHNLKPNEMMEPLMVQPEQQWRPPPQYEQQTLEEREINEKEDEEEEYNDDGVEEEGESGDNIVEDEGTS. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04196 572 ProSiteProfiles Myb-like domain profile. 396 460 IPR001005 -
Seca9g04196 572 ProSiteProfiles Myb-like domain profile. 75 133 IPR001005 -
Seca9g04196 572 MobiDBLite consensus disorder prediction 36 74 - -
Seca9g04196 572 MobiDBLite consensus disorder prediction 171 196 - -
Seca9g04196 572 SMART sant 73 135 IPR001005 -
Seca9g04196 572 SMART sant 400 462 IPR001005 -
Seca9g04196 572 Coils Coil 533 553 - -
Seca9g04196 572 MobiDBLite consensus disorder prediction 330 372 - -
Seca9g04196 572 MobiDBLite consensus disorder prediction 522 572 - -
Seca9g04196 572 Gene3D - 404 465 - -
Seca9g04196 572 Gene3D - 77 138 - -
Seca9g04196 572 FunFam Trihelix transcription factor GT-2 404 465 - -
Seca9g04196 572 FunFam Trihelix transcription factor GT-2 77 138 - -
Seca9g04196 572 CDD GT1 403 467 - -
Seca9g04196 572 MobiDBLite consensus disorder prediction 540 572 - -
Seca9g04196 572 PANTHER FI21293P1 51 544 - -
Seca9g04196 572 MobiDBLite consensus disorder prediction 48 69 - -
Seca9g04196 572 Pfam Myb/SANT-like DNA-binding domain 75 161 IPR044822 -
Seca9g04196 572 Pfam Myb/SANT-like DNA-binding domain 402 489 IPR044822 -
Seca9g04196 572 MobiDBLite consensus disorder prediction 203 219 - -
Seca9g04196 572 CDD GT1 75 140 - -
Seca9g04196 572 MobiDBLite consensus disorder prediction 171 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04196 Seca-Chr9 100404729 100407836 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04196 59 524 Trihelix Transcription Factor Family AT1G76880 48.728 2.33e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca9g04196 Myb_DNA-bind_4 2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04196 - - gmx:100807507 629.787