Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04192 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGAGGAGGAAGCTCTGGAGATGCAGCAGTGGCAGCTGCTGCTGCATCAGCAGGAGGAGCTCATGACGGCGGTGACACGGCGGCTGGTGGCGGAGGATCAAATTCAGGGGATGATGAAAGGGGAAGAGGAGAAGAAGGTGACCGGAGCTTTGGTGGGAACAGGTGGCCAAGACAAGAGACTCTCGCTTTGTTGAAGATACGGTCAGATATGGGCATAGCCTTTAGAGATGCCAGTATTAAGGGTCCCTTATGGGAAGAAGTCTCAAGGAAGATGGCAGAGCTTGGCTATCACAGAAACGCCAAGAAATGCAAAGAGAAGTTTGAGAATGTTTACAAGTACCACAAGAGAACCAAAGAAGGAAGAAGTGGTAAATCAGATGGTAAAACTTATCGTTTTTTTGATCAATTAGAAGCACTTGAAAACAACCCTGCAATTCAATCTCCAACACCTTTAAAACCACTACCTGCAACACCAGTATCAGTAGTAGTAACATCTGCATCATTGCCATCACTTCCAACCACAGCAGCTACTACTATTAGTACCACAACAACAGTGCCAGTGCCATTACCACCATTGTCCAACACCAATAATATTCCCCCCACCACCACCACCACTGTTCCCTCACATTCCACCACTGTTCCATCAACAACAACAACACCACTTCCCATTTCCATACCTCAAGTCCAAGGCATTCTCAACACTCCACCAATTAACCTCACAATCCCTTCCTTCCCACCACAACCACCATCATCAAACCCTACATATTTCCCAAACCCTACAACCATCCCTCCTTACACCATCACCCCACCTTCTTTCCCAACAGATCTATTGTCCAATTCAAGTTCTTCCTCAACTTCCTCAGAGGAAACAACCACAATGGAAGGAGGAAGGAGGAAGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGACTAATGAAGGAGGTTATGGAGAAACAAGAGGAGCTGCAGAAGAGATTCTTGGAAGCCATAGAGAAAAGAGAAAGAGATAGAGTTGCTAGAGAAGAAGCATGGAGAGTGCAAGAGATGCAAAGGATAAATAGGGAAAGAGAAATTCTAGCACAAGAAAGATCAATAGCTGCAGCAAAAGATGCAGCTGTTATGGCATTTTTGCAAAAGATAGCTGAACAACAAAATCTTGGTACACCATTGAACAACACCAATAATATTCCACAACCAGTGCCACAAGAAACCACACCTACACCTACACCTACACCAACACCACCACAATTGCAAACTCCAACACCAACAATAGCAACACCAACACCAACACCACCAATTCCTCAGGCCCCACCATTAGCCCCACAACAGCAACATCAGGTGCAGGTGCAGGTGCAGCAACAACAGCAACAACAACAGCAAGTGACCAATATGGAAATAATAAAAAGTGATAATGGGGAGAGTGTGATGACAGCTAACTCTTCAAGGTGGCCAAAAGTTGAGGTTCAAGCATTGATAAACTTGAGAACAAGCCTTGAAACAAAGTACCAAGATAGTGGACCAAAAGGACCACTATGGGAGGAGATATCAGCCTTGATGAAGAAAATGGGGTACAACAGGAATGCCAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGACCAGAAGATTCAAAGACTTGTCCTTATTTCCACCAATTGGATGCTCTATACAGGGAAAGGACCAACAAGATGGAGAAGCCAGATGGCACCATGATGGCGCCGTTGATGGTGCGGCCGGAGCAGCAGTGGCCTCCGCAGCAGACAACCGTGCCGGATGTGACCATGGAAGACGCCGGCAATGACCGGCGACAACACCGCGAGGAGGAAGAGTATGATGATGATGATGATAAGGATGTTGGTGGTGAAGAAGAAGATGATGAAGATGAAGATGGAGGTGAGAATTTTGAGATTGTGGCAAGTAAACCAGCTTCAGTGGATGCTTCTGCTGAGTGA 2028 0.4606 MLGDSAVLGTGGGGGGSSGDAAVAAAAASAGGAHDGGDTAAGGGGSNSGDDERGRGEEGDRSFGGNRWPRQETLALLKIRSDMGIAFRDASIKGPLWEEVSRKMAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLEALENNPAIQSPTPLKPLPATPVSVVVTSASLPSLPTTAATTISTTTTVPVPLPPLSNTNNIPPTTTTTVPSHSTTVPSTTTTPLPISIPQVQGILNTPPINLTIPSFPPQPPSSNPTYFPNPTTIPPYTITPPSFPTDLLSNSSSSSTSSEETTTMEGGRRKRKRKWKDFFERLMKEVMEKQEELQKRFLEAIEKRERDRVAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMAFLQKIAEQQNLGTPLNNTNNIPQPVPQETTPTPTPTPTPPQLQTPTPTIATPTPTPPIPQAPPLAPQQQHQVQVQVQQQQQQQQQVTNMEIIKSDNGESVMTANSSRWPKVEVQALINLRTSLETKYQDSGPKGPLWEEISALMKKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERTNKMEKPDGTMMAPLMVRPEQQWPPQQTTVPDVTMEDAGNDRRQHREEEEYDDDDDKDVGGEEEDDEDEDGGENFEIVASKPASVDASAE. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04192 675 ProSiteProfiles Myb-like domain profile. 492 552 IPR001005 -
Seca9g04192 675 MobiDBLite consensus disorder prediction 603 675 - -
Seca9g04192 675 PANTHER FI21293P1 35 628 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 400 456 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 284 304 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 414 452 - -
Seca9g04192 675 SMART sant 64 126 IPR001005 -
Seca9g04192 675 SMART sant 492 554 IPR001005 -
Seca9g04192 675 CDD GT1 494 559 - -
Seca9g04192 675 Gene3D - 496 557 - -
Seca9g04192 675 Gene3D - 68 129 - -
Seca9g04192 675 FunFam Trihelix transcription factor GT-2 496 557 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 284 312 - -
Seca9g04192 675 Coils Coil 318 345 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 636 658 - -
Seca9g04192 675 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
Seca9g04192 675 Pfam Myb/SANT-like DNA-binding domain 494 581 IPR044822 -
Seca9g04192 675 CDD GT1 66 131 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 199 235 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 50 65 - -
Seca9g04192 675 ProSiteProfiles Myb-like domain profile. 66 124 IPR001005 -
Seca9g04192 675 FunFam Trihelix transcription factor GT-2 68 129 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 1 67 - -
Seca9g04192 675 MobiDBLite consensus disorder prediction 621 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04192 Seca-Chr9 99864643 99867680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04192 64 614 Trihelix Transcription Factor Family AT1G76890 45.599 3.69e-143 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca9g04192 Myb_DNA-bind_4 2.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04192 - - gmx:100817001 389.808