Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04157 ATGCTGCGATTCAAGCTGAACTCGAAGCTATCAAATCTCATGGTGTCAGTGCTCACGTCGTTCATACTCATTGCGCTGAAGAGAATTGAGAACCCTGTGAACAGACAAGTTACCTTTTGCAAGCGCCGAGCAGAGCTTCTTAAGAATGCTAAGGAGAACTCTATGTTGTGTAATGCTGAAATTGGCCTTGTCATTTTCTTCGCTCATGGAAAGCTCTATGAACTCACCACCAAAGGGTATATATCTATATCTAAATAA 258 0.4186 MLRFKLNSKLSNLMVSVLTSFILIALKRIENPVNRQVTFCKRRAELLKNAKENSMLCNAEIGLVIFFAHGKLYELTTKGYISISK. 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04157 85 SUPERFAMILY SRF-like 24 79 IPR036879 GO:0003677|GO:0046983
Seca9g04157 85 SMART madsneu2 24 78 IPR002100 GO:0003677|GO:0046983
Seca9g04157 85 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Seca9g04157 85 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Seca9g04157 85 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Seca9g04157 85 ProSiteProfiles MADS-box domain profile. 24 79 IPR002100 GO:0003677|GO:0046983
Seca9g04157 85 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 77 - -
Seca9g04157 85 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 74 IPR002100 GO:0003677|GO:0046983
Seca9g04157 85 Gene3D - 31 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04157 Seca-Chr9 97598522 97599687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04157 24 79 MADS-box Gene Family AT1G71692 75.000 3.83e-24 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca9g04157 SRF-TF 2.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04157 - - egt:105974178 93.9745