Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04078 ATGGGATTTCCAAAGTTATTAATAGAGGGTAAGTCTCGAAGAATCGAAGAATTACAGACGAATGTGCAAAAAAAACTGAATTGTGGGAATCGAAAACTCAACATTGATATTACAAGAATTACAAACTCTTATGGACACCCTAATATTCTTGCAGAATTTATAGCCGGACAATTAAAAAATAGAGTTTCATTTCGTAAAGCAATGAAAAAAGCTATTGAATTAATTGAACAGGCAGGTACAAAAGGAGTTCAAGTACAAATTGCGGGACGTATCGATGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTCCTATACAGCACTTGAGCCCGCTTGGATCACATCTAGACAAATAGAAGCGGGGAGGAGGGCAATATCACGAAATGTCCGCCGGGGTGGACAAATATGGGTACGAATATTTCCAGACAAATCTGTTACAGTAAGACCCACCGAAACACGTATGGGTTCGGGAAAAGGATCTCCCAAATATTGGGTAGCTGTCGTTAAACCCGCCGATAATAGCGGAGCCCGCGAATTAATGTGTATTCGAATCATAGGAGCTAGTAATAGACGATATGCTTATATTGGTGATATTGTCGTTGCTGTAATCAAAGAAGCAGTACCAAATACGCCTTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGTATAATAATACAGTATGATGATAATGCTGCGGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTGCGCAATCGCCCGGGAATTGAGACAATTAAATTTCACAAAAATAGTTTCATTAGCACCTGAGGTATTATAA 897 0.3824 MGFPKLLIEGKSRRIEELQTNVQKKLNCGNRKLNIDITRITNSYGHPNILAEFIAGQLKNRVSFRKAMKKAIELIEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTALEPAWITSRQIEAGRRAISRNVRRGGQIWVRIFPDKSVTVRPTETRMGSGKGSPKYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04078 298 ProSitePatterns Ribosomal protein L14 signature. 236 262 IPR019972 -
Seca9g04078 298 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 182 297 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 FunFam 50S ribosomal protein L14, chloroplastic 179 298 - -
Seca9g04078 298 ProSitePatterns Ribosomal protein L16 signature 2. 169 180 IPR020798 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 ProSitePatterns Ribosomal protein L16 signature 1. 146 157 IPR020798 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 Gene3D Ribosomal protein L10e/L16 123 184 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 PRINTS Ribosomal protein L16 signature 175 204 IPR000114 GO:0003735|GO:0006412|GO:0019843
Seca9g04078 298 PRINTS Ribosomal protein L16 signature 129 140 IPR000114 GO:0003735|GO:0006412|GO:0019843
Seca9g04078 298 PRINTS Ribosomal protein L16 signature 145 174 IPR000114 GO:0003735|GO:0006412|GO:0019843
Seca9g04078 298 SUPERFAMILY Ribosomal protein S3 C-terminal domain 42 124 IPR036419 -
Seca9g04078 298 SUPERFAMILY Ribosomal protein L16p/L10e 120 186 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 Pfam Ribosomal protein L14p/L23e 183 298 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 Gene3D - 43 122 IPR036419 -
Seca9g04078 298 NCBIfam 50S ribosomal protein L16 116 186 IPR000114 GO:0003735|GO:0006412|GO:0019843
Seca9g04078 298 Pfam Ribosomal protein L16p/L10e 106 186 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 Hamap 50S ribosomal protein L14 [rplN]. 155 298 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 CDD Ribosomal_L16_L10e 123 186 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 NCBIfam 50S ribosomal protein L14 184 298 IPR005745 GO:0003735|GO:0006412|GO:0015934
Seca9g04078 298 NCBIfam 30S ribosomal protein S3 2 123 IPR005704 GO:0003735|GO:0006412
Seca9g04078 298 SUPERFAMILY Ribosomal protein L14 181 298 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 Pfam Ribosomal protein S3, C-terminal domain 54 123 IPR001351 GO:0003735|GO:0006412
Seca9g04078 298 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 2 49 IPR009019 GO:0003723
Seca9g04078 298 Gene3D Ribosomal protein L14 185 298 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca9g04078 298 SMART Ribosomal_L14_2 182 298 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04078 Seca-Chr9 91161833 91164340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04078 182 298 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 34.711 5.40e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04078 K02982 - mtr:120580175 521.161