Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04077 ATGTATGGACAACATCGTTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAAATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATAGTTTCTGGTACAGAAGTTCCGATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTAATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGAGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAAAGCCGAATCTAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGAAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTACCAATCATTTATTAAAAAAAATAAATAAGCTTAATACAAAAGCAGAAAAGGAAATAATAATAACTTGGTCCAGAACATCTACCATTATACCCACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAGCACCTACCTATTTATATAATAGATCGTATGGTAGGCCATAAATTGGGAGAATTTGCACCTACTCTAAACTTCCGAGGACATGCGAAAAATGATAATAGATCTCGTCGTTAA 1074 0.405 MYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLINQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQEGNVGVNQKSLGKAESKCWLGKRPVVREVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRTNHLLKKINKLNTKAEKEIIITWSRTSTIIPTMIGHTIAIHNGKEHLPIYIIDRMVGHKLGEFAPTLNFRGHAKNDNRSRR. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04077 357 Gene3D - 1 85 IPR012340 -
Seca9g04077 357 PANTHER RIBOSOMAL PROTEIN L2 9 277 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 Gene3D Ribosomal protein L2, domain 3 198 277 IPR014726 -
Seca9g04077 357 SMART Ribosomal_L2_2 10 86 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 SMART Ribosomal_L2_C_2 92 255 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 SUPERFAMILY Nucleic acid-binding proteins 5 93 IPR012340 -
Seca9g04077 357 PRINTS Ribosomal protein S19 family signature 298 317 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 PRINTS Ribosomal protein S19 family signature 330 345 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 PRINTS Ribosomal protein S19 family signature 318 330 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 Pfam Ribosomal Proteins L2, RNA binding domain 10 86 IPR022666 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 Gene3D - 86 196 IPR014722 -
Seca9g04077 357 Pfam Ribosomal protein S19 276 348 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 SUPERFAMILY Translation proteins SH3-like domain 136 275 IPR008991 -
Seca9g04077 357 NCBIfam 30S ribosomal protein S19 278 357 IPR005732 GO:0003735|GO:0006412|GO:0015935
Seca9g04077 357 ProSitePatterns Ribosomal protein S19 signature. 318 342 IPR020934 GO:0003723
Seca9g04077 357 Hamap 30S ribosomal protein S19 [rpsS]. 258 354 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 Pfam Ribosomal Proteins L2, C-terminal domain 136 253 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 NCBIfam 50S ribosomal protein L2 135 277 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Seca9g04077 357 FunFam 50S ribosomal protein L2 134 197 - -
Seca9g04077 357 MobiDBLite consensus disorder prediction 228 255 - -
Seca9g04077 357 FunFam 50S ribosomal protein L2 198 279 - -
Seca9g04077 357 SUPERFAMILY Ribosomal protein S19 276 349 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca9g04077 357 FunFam 50S ribosomal protein L2, chloroplastic 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04077 Seca-Chr9 91159331 91161079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04077 21 237 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 30.043 1.45e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04077 K02886 - cave:30215254 491.115