Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04043 ATGAGTCGAGGAGGTGCAGCTGGTCCCAAAGGGAAGAAGAAGGGAGTGACATTCACCATTGACTGCGCGAAGCCAGTGGAGGACAAGATCATGGACATTGCATCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGCAAGGCCGGTGCTCTCGGCGATACCGTCACTGTTTCACGCGAGAAGACCAAGATAACTGTCACTTCTGACAGCAACTTCTCCAAACGGTATCTGAAGTACTTGACAAAGAAGTACTTGAAGAAACACAATGTACGGGACTGGCTCAGAGTGATTGCTTCTAACAAAGATAGAAATGTTTATGAATTGAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTGA 375 0.4613 MSRGGAAGPKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVSREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04043 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Seca9g04043 124 FunFam 60S ribosomal protein L22-2 5 124 - -
Seca9g04043 124 Gene3D - 6 124 IPR038526 -
Seca9g04043 124 PANTHER 60S RIBOSOMAL PROTEIN L22 3 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04043 Seca-Chr9 89989419 89991535 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04043 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 3.89e-69 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04043 K02891 - nnu:104598935 225.328