Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04016 ATGGATGGTGAATTTCAACAGTGTTATGTTGATGATAATGAATCTGCGTTTCAGGGATTGGATGATTTGTCATGTTCTAGTGATCATATTTCTGTTAGTAATGAAGAAGGGGGTTTTCATGCATGGTCAGACGTATATGATGGTGGGAATATTGCTGTAGAAGATGATATGGAAAATTCTATGTTTGAAGAGGTTAATGACCATGATGTTGTGAATGATGTTAGAATTGGTATCAATAGTAAGGCTGACATAGCAATCATGGACCTAGTCACTTTTAGCCCTCATTTAATAAAAAACTATGATTTTCCTACTTTGGACATGGCCTACATCTTCTATTGTGATTATGCGGAAGCAAATGGTTTTAGTGTCCGAAAAGGAAGAATTCTATATAGTAAGAAAACAATGGAGGAACTACAACAAGATTATTGGTGTTCTAAACGGGGTTTTCGAGAGGATAGAGGGCTGAAAATGGAAGACAGGAAGCGTGAGATTAGACCTGAAACTCGATGTGATTGTAAAGCCAATTTTCGAGTTCATGTGGACAAAGTGACAGGGCGTTGGTATGCAACAGTGTTTAATGATGAACACACACATGATTTATCGGATCCAAGCTATTCTAGGTTGCTTCCGGGGAATCGGAAGATGACTAATGCTGATATCATTCAAATGAATAGCATGTTGAAGGCAGGTATTAGCCCATCTCATATTTATGGTCATTTTGCTTTGCAATGCGGAGGATATGACAAAATTGGGTTTAGGAAGAAGGACATCTACAATCAGATAGAACGACAAAGAAAGAAGCAAGCTTCTGACGCTATGGCTGCTATAGAGTATTTGACTCAGTTGGCTTCAAAGGATGATATGATGTTCTTTGAGCATACTGTTGATGAAGAAGGAAGACTTCAACACCTATTCTGGAGTGATGGCATTAGCCAAAAAAGTTATAATGTTTTTGGTGATGTTGTCGCCTTTGATGCAACGTATGGCAAGAATAAGTATCTATTGCCTCTTGTTGTCTTTTCTGGAGTGAACAATCATAACAGATCAACTATTTTTGCAGCTGCAATAGTTGCGAATGAGCTTGAAGAGACTTATGTGTGGTTGTTACAACAATTTTCAAAGGTTATGAAAGGGAAAGAGCCTACTGCAGTAATTACTGACGGTGACAAAGCAATGAGGAATGCAATCAAAGTTGTGTTTCCAAATGCTCGTCACCGGCTATGTGCATGGCATTTGCTACGTAATGCCACTTCCAATGTGAAAAATGTTGACTTTAATGCTGACTTTGAGAGGTGTATGCTTGGTGAGTATGAGGTTGGGAAGTTTCGGCAAAAGTGGTTTGACATGGTGACAAAGTTCGGCTTGGAGGAGCATCCATGGGTGAACAAAATGTATGATTCTAGATCAAAGTGGGCCAATGCATATTTTCGTGGGAATTTCTTTGCTGGGTTTAGGACGACCTCCCGTTGTGAGAGCCTGCATGCTGAGTTAGGTAAGTACGTTCACTCACGATATAATTTGATGGACTTTTTACAACATTATCATCGTTGTCTAAGTCATATGCGATTCAAGGAATTGGAAGATGAATTTGATTCTATTAATGGGGAGGCTGTCCTACAAACCAACTTTCCATCACTTGAGAAATCAGCTTCGAATCATTACACAAGAAGGATGCTTAAACTATTTCGTGTTGTGCTTAACAAGACAGAGGGTATGACCGTAACGGGTAGTAATGAAATACTTTTGTATACAATGTTCTCGGTTTGTAAGTTGCACGGTGGTACTAAGGAATGGCGGGTCTCTTATTATCCTGCAAGTAATGACTTCAAGTGCTCTTGTTTGTTGATGGAGTCAAGAGGATTGTCTTGTGAGCATATATTAGCTGTGCTGGTTTATCTTGGAGTGGAAGATCTACCAAATTCACTAATCATGAGTAGATCGACGAAGTGGGCAAAGGATGGTGTTGGCTATTTTGGATATGATCCAATGAAGTACTGGGACTCACACAGGCTTTGTAGAAGAGCAGCGTTGTTAGACTACTCCATGAAAATCATTAATGTCCAAACATATACCTATGAGGATTTTGCGAACTATATGGAGAAGGTCAGTCATGAATGGGAAGATTTAAAGGCAAAGAAAGCTGCTGAAATGGGTAATGGTTCTGCATCTATGTCTGGTAATGATTTATTGAGAGATCCAGTCCGTGCAAGCACAAAAGGGAAAGGTCCTGTTGGTACAAGTAGTTCAGGACTTAAAGTGAAGCGTAAGAGGCATTGTTCATACTGTAAGTTATCTGGACATAATCGTGTCACATGCCCCCAACGTATACAAAACACACAGGAGTCAGTTACTAGGGATGAAGACAACTTTCAAAGTGAAGAGTTTGAGGATTGA 2394 0.3956 MDGEFQQCYVDDNESAFQGLDDLSCSSDHISVSNEEGGFHAWSDVYDGGNIAVEDDMENSMFEEVNDHDVVNDVRIGINSKADIAIMDLVTFSPHLIKNYDFPTLDMAYIFYCDYAEANGFSVRKGRILYSKKTMEELQQDYWCSKRGFREDRGLKMEDRKREIRPETRCDCKANFRVHVDKVTGRWYATVFNDEHTHDLSDPSYSRLLPGNRKMTNADIIQMNSMLKAGISPSHIYGHFALQCGGYDKIGFRKKDIYNQIERQRKKQASDAMAAIEYLTQLASKDDMMFFEHTVDEEGRLQHLFWSDGISQKSYNVFGDVVAFDATYGKNKYLLPLVVFSGVNNHNRSTIFAAAIVANELEETYVWLLQQFSKVMKGKEPTAVITDGDKAMRNAIKVVFPNARHRLCAWHLLRNATSNVKNVDFNADFERCMLGEYEVGKFRQKWFDMVTKFGLEEHPWVNKMYDSRSKWANAYFRGNFFAGFRTTSRCESLHAELGKYVHSRYNLMDFLQHYHRCLSHMRFKELEDEFDSINGEAVLQTNFPSLEKSASNHYTRRMLKLFRVVLNKTEGMTVTGSNEILLYTMFSVCKLHGGTKEWRVSYYPASNDFKCSCLLMESRGLSCEHILAVLVYLGVEDLPNSLIMSRSTKWAKDGVGYFGYDPMKYWDSHRLCRRAALLDYSMKIINVQTYTYEDFANYMEKVSHEWEDLKAKKAAEMGNGSASMSGNDLLRDPVRASTKGKGPVGTSSSGLKVKRKRHCSYCKLSGHNRVTCPQRIQNTQESVTRDEDNFQSEEFED. 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04016 797 SMART 26again6 609 636 IPR006564 GO:0008270
Seca9g04016 797 Pfam MULE transposase domain 321 415 IPR018289 -
Seca9g04016 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 98 690 IPR031052 GO:0006355
Seca9g04016 797 MobiDBLite consensus disorder prediction 717 750 - -
Seca9g04016 797 MobiDBLite consensus disorder prediction 773 797 - -
Seca9g04016 797 Pfam FAR1 DNA-binding domain 111 200 IPR004330 -
Seca9g04016 797 ProSiteProfiles Zinc finger SWIM-type profile. 598 634 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04016 Seca-Chr9 88101264 88104960 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g04016 MULE 5.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04016 - - tpra:123913749 764.992