Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04000 ATGGCCGGTGTGTATGATCAGGTTGGAAATGTTTTTCCTGGTAGGCAAAACTGGAGACTCAAGGTTAGGGTTGTAAGGGTTTGGGAGATGTATCCCATTGATGAACCGAGCAGGACTTTCTCTGTTGAGATGGTGTTGGTTGATCATTCGGGTGAGAGGATACAAGCATCCATCCGCAAACCTATGATGAAAAAGTTTGCAGGCAATATAATCGAAGGGGAGGCCTACAAAATGCTTTTCTTTGGGGTTGTTAGAAACCTGGGTTCTTATAGGGAAACCAAGCATGAATACAAACTCATTTTCCATCCGAAGACCAAGATATCTATGTGCGAAAGTTCCATTATTTCACTACATGGCTTGAATCTATACAATTCCGAGGACATAATGTCTACCAATGGCCAGAGCGATTATCTTGTCGATGTCATTGCCTTGTTGACTGCTATATCTGCTGAGAAACGTTTTTTCCGTGATGGGCGGATGACGAGGGTTATGCAGTTGGAGCTGACAGACCACAAGGGGAAGGTGCACTGCGCTATGTTTGGTAGTTACGTGGATATGGTTGGTGATTTGCTTAACGGAATGGGTCCAGAGTTAACCGTGCTTGTAGTTATGTTTGCGAAAGTGAAGTTATACAAAGGAGAGGTTGTGCTGCAAAACGTTCTTAATACTACTAAGATTTTATGCAACCCTCAGATATCTAAGGTTGAGGAGTTTCGGAACGGGGCTGCTGTGCATGGCATTGATATATTAGCACCGATGGGTGTTATTGCTGACGATTACAACAATAGTCCTCCAAAGGACGAGTTTCTGAAGGCGCACCCAAGGAAGACCATTAAACAACTACATGATACAGAAGAGGATGGGTGCTTCATCGTGTTAGCTTCTATAGTCAGTGTATTGAATGATGGTAATTGGTGGTATGCTGCATGCAAGTGTCATCGGGCAGTGTCCATGGATGGTGATAGGTATTATTGCTCCTCATGCGGCATTCATGTTCGAGACGTGTCTTCCAGATACAAGCTTAAAGTAGAGGTTTACGACGGGGAGGATACAGCTGCGTTTGTTCTTTTTGATAGTGACACTGAGATGTTAATTGGTCATAATTGCGCTGAATTATTGGCTATTACAAAGGTTGAATAA 1140 0.4333 MAGVYDQVGNVFPGRQNWRLKVRVVRVWEMYPIDEPSRTFSVEMVLVDHSGERIQASIRKPMMKKFAGNIIEGEAYKMLFFGVVRNLGSYRETKHEYKLIFHPKTKISMCESSIISLHGLNLYNSEDIMSTNGQSDYLVDVIALLTAISAEKRFFRDGRMTRVMQLELTDHKGKVHCAMFGSYVDMVGDLLNGMGPELTVLVVMFAKVKLYKGEVVLQNVLNTTKILCNPQISKVEEFRNGAAVHGIDILAPMGVIADDYNNSPPKDEFLKAHPRKTIKQLHDTEEDGCFIVLASIVSVLNDGNWWYAACKCHRAVSMDGDRYYCSSCGIHVRDVSSRYKLKVEVYDGEDTAAFVLFDSDTEMLIGHNCAELLAITKVE. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04000 379 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Seca9g04000 379 Gene3D - 6 110 IPR012340 -
Seca9g04000 379 SUPERFAMILY Nucleic acid-binding proteins 273 376 IPR012340 -
Seca9g04000 379 CDD RPA1_DBD_B_like 140 239 - -
Seca9g04000 379 SUPERFAMILY Nucleic acid-binding proteins 6 112 IPR012340 -
Seca9g04000 379 CDD RPA1_DBD_C 276 375 IPR047192 -
Seca9g04000 379 Gene3D - 115 246 IPR012340 -
Seca9g04000 379 CDD RPA1_DBD_A_like 19 107 - -
Seca9g04000 379 Pfam Replication factor-A C terminal domain 292 376 IPR013955 -
Seca9g04000 379 PANTHER OS03G0429900 PROTEIN 9 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g04000 379 Gene3D - 266 379 IPR012340 -
Seca9g04000 379 SUPERFAMILY Nucleic acid-binding proteins 121 243 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04000 Seca-Chr9 85789248 85792227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04000 13 372 Core DNA Replication Machinery Family AT5G08020 22.251 1.10e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04000 - - lja:Lj6g3v0884310.1 351.673