Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03997 ATGGCTGCCCCAAGTTCAAGCTTTTTGTCTCGGGATTCTTTGCATATACTATTTAAAACCAGTTTGTCTCAAACTTTGCATCATCGCAAGGGATCAAGGTTGATTGTTAGAGCAGATTCAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGCAATTACCATCCTGATGTGAACAAAGAACCTGGAGCAGAAACAAAATTTAAGGAGATCAGCAATGCATATGAGGTTTTATCAGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCTGGGCTTAAAGGTTCTGGAATTGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGTCCTTGTTTGAGGGGATGAATCGTGGTTCTCCTAGAGGTTCTTGGAATGGAGCAATTGATGGCGAAGATGAATATTACAGTCTTCTTTTGAACTTCAAAGAAGCAGTTTTTGGTGTAGAAAAAGAGATAGAGATTAGCCGATTAGAGATCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCAAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACGTGCTCTTCATGCAATGGGACTGGGGAAATTTCAACACCTTGCAGTACATGTTCTGGGGATGGTCGAGTGAGGAAATCGAAGCGGATTAGTCTTAAGGTCCCAGCTGGTGTGGACTCCGGTAGTCGATTAAGGGTCCGAAATGAAGGGAATGCAGGAAGGCGAGGGGGTGCTCCCGGAGATCTCTTTGTTGTTATTGAGGTTATCCCAGATCCTGTCCTTAGAAGAGATGACACTAACATTTTATACACCTGCAAGGTTTCTTACATTGATGCAATCTTGGGGACTACAATTAAGGTTCCTACAGTAGATGGAATGGTGGATTTGAAAATTCCAGCAGGGACCCAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCACTGCTGAATAAAAACAATATGAGAGGAGATCAATTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTAAGCAGTGATGAGAAAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACCGGTCGGAGATGA 1188 0.431 MAAPSSSFLSRDSLHILFKTSLSQTLHHRKGSRLIVRADSDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAETKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGIGMGDFSNPFDLFESLFEGMNRGSPRGSWNGAIDGEDEYYSLLLNFKEAVFGVEKEIEISRLEICGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCSTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVIEVIPDPVLRRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLNKNNMRGDQLVRVQVEIPKRLSSDEKKLIEELADLSKGKTATGRR. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03997 395 ProSitePatterns Nt-dnaJ domain signature. 82 101 IPR018253 -
Seca9g03997 395 Gene3D - 288 394 - -
Seca9g03997 395 CDD DnaJ 41 94 IPR001623 -
Seca9g03997 395 Pfam DnaJ central domain 178 241 IPR001305 GO:0031072|GO:0051082
Seca9g03997 395 SMART dnaj_3 40 97 IPR001623 -
Seca9g03997 395 Gene3D - 178 241 - -
Seca9g03997 395 Gene3D - 148 283 - -
Seca9g03997 395 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 165 245 IPR036410 -
Seca9g03997 395 NCBIfam molecular chaperone DnaJ 41 384 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca9g03997 395 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 21 391 - -
Seca9g03997 395 CDD DnaJ_zf 178 241 IPR001305 GO:0031072|GO:0051082
Seca9g03997 395 Pfam DnaJ C terminal domain 153 368 IPR002939 -
Seca9g03997 395 SUPERFAMILY Chaperone J-domain 38 134 IPR036869 -
Seca9g03997 395 ProSiteProfiles Zinc finger CR-type profile. 165 246 IPR001305 GO:0031072|GO:0051082
Seca9g03997 395 SUPERFAMILY HSP40/DnaJ peptide-binding domain 293 379 IPR008971 GO:0006457|GO:0051082
Seca9g03997 395 SUPERFAMILY HSP40/DnaJ peptide-binding domain 146 300 IPR008971 GO:0006457|GO:0051082
Seca9g03997 395 FunFam Molecular chaperone DnaJ 170 246 - -
Seca9g03997 395 CDD DnaJ_C 149 371 - -
Seca9g03997 395 PRINTS DnaJ domain signature 97 116 IPR001623 -
Seca9g03997 395 PRINTS DnaJ domain signature 77 97 IPR001623 -
Seca9g03997 395 PRINTS DnaJ domain signature 43 61 IPR001623 -
Seca9g03997 395 PRINTS DnaJ domain signature 61 76 IPR001623 -
Seca9g03997 395 Gene3D DnaJ domain 38 140 IPR036869 -
Seca9g03997 395 FunFam Chaperone protein dnaJ A6 chloroplastic 38 141 - -
Seca9g03997 395 Hamap Chaperone protein DnaJ [dnaJ]. 38 391 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca9g03997 395 FunFam Putative Mitochondrial DnaJ chaperone 233 283 - -
Seca9g03997 395 FunFam Chaperone protein dnaJ 1, mitochondrial 288 395 - -
Seca9g03997 395 ProSiteProfiles dnaJ domain profile. 41 105 IPR001623 -
Seca9g03997 395 Pfam DnaJ domain 41 102 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03997 Seca-Chr9 85720751 85725063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03997 42 104 C2H2 Transcription Factor Family AT1G74250 43.478 1.58e-09 57.8