Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03991 ATGTTTGCTCTTACCTCAATCAAAGGTATTGGCAGGCGATTCGCTAACATTGTCTGCAAAAAAGCCGATGTCGACATGAACAAGAGAGCTGGTGAATTGAGTGCTGCTGAGTTGGATAATCTTATGACTATAGTTGCCAACCCTCGGCAATTCAAGATCCCAGATTGGTTTCTGAACAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCAAATGCACTGGATATGAAGCTGAGGGATGATTTGGAGCGACTGAAGAAAATCAGAAACCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGACAGCATACTAAGACTACTGGTCGCAGGGGAAAAACTGTTGGTGTCTCTAAGAAGCGTTAG 381 0.4567 MFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELDNLMTIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03991 126 ProSitePatterns Ribosomal protein S13 signature. 95 108 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca9g03991 126 Gene3D - 1 54 - -
Seca9g03991 126 Gene3D 30s ribosomal protein s13, domain 2 66 116 IPR027437 -
Seca9g03991 126 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 1 126 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca9g03991 126 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 126 - -
Seca9g03991 126 FunFam 40S ribosomal protein S18 66 117 - -
Seca9g03991 126 SUPERFAMILY S13-like H2TH domain 2 126 IPR010979 GO:0003676
Seca9g03991 126 Pfam Ribosomal protein S13/S18 2 116 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca9g03991 126 ProSiteProfiles Ribosomal protein S13 family profile. 1 119 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03991 Seca-Chr9 85548208 85549872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03991 1 126 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 97.619 3.79e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03991 K02964 - qsu:112019340 250.751