Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03945 ATGCTCCTCGAAGGATCGTTCTTTCTGAGCCTAAAACCCCAAAACATAGTTAAGCGCTGCCACATCCCAAGAAGAAGTCCATCAATGGCGGGAGCTACAGGAAGAACCCTCTTCTCCCTCTCTCCTTCCTTCACCACACGCCTCTCTCATCATGCCACGCGCCTCCCATTCTTTCTCACTCGCTCGAAGCCCATTGCCGTTTTGCCACGGTTCAGGCCTCTCTGTTCCATCACCGCCACACCAGAAACCATGGACCCGGAGCAGATGAAGCACTCCATGCTCCTCGAGAAGCTCAGAATGAGGCACCTCAAGGACAGTGCCAAAACCCCAGAAGCCAAGAATCCCCCAAAGAAGGGTCCTGCTGTTGCTGCTGAGAATGAGATGGGGAAGAAATCTGAGGGGAAGAAGAAGGTGGTGGAGGTTGGGAGTTTTGAGGAGTTGGGAATCAGTGATGAGGTTATGGGGGCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATTGGTGTCCCTGCTGTGTTGGAAGGGAAGAGTGTGGTTTTAGGGTCTCATACTGGGTCTGGCAAGACTCTGGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGATGAACAATTGAATGGAATGCTGATGAAGCCCAGGCGTCCCCGAGCTGTTGTGTTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGTCGTCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATAGATATGGTGGTTGGTACTCCTGGCAGGATTCTTCAACATATAGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGATACAATGTTTGATCGGGGCTTTGGTCCTGACATACGCAAATTTCTAGGCCCGTTAAAACGTCGTACTTCAAAATCTGATGGCCTAGGTTTTCAGACTATCCTGGTCACAGCAACCATGACAAAGGCTGTGCAATTGCTGATTGATGAGGAGTTTCAAGGAATTGTACATCTGCGCACATCAACGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTCTCGGGTTCTGAGAACAAGATGGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCAAAAGGGAACAGGGTGATGGTTTTCTGCAATACATTGGATTCGAGCCGTGCTGTAGATCACTTTCTTGGTGAAAACCAGATTTCTACTGTGAACTACCATGGGGAGGTACCGGCAGAACAAAGGGTTGAAAACCTCAACAAGTTTAAGAATGACAATGAAGATTGCCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCTTTGAATTCTATCGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACGAGTTTGGTTGCTAAAAAGGACTTGATCTTGGCCACCAAAATAGAGGAGGCAGTAAGAAAGAATGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAAAGGACATTGCCAGGACCCAAATAACTGAGCAGAGGGGAAGGAGCAAACCATTGGTTAAAGTTTCAAAAGCTAAGCACAAATCTGGTGGCCGCACCAATGCTGGGAATACTGGATCAGGTATGAAATCTGGTAAAGGATCACCGTCAGCAAAATCTATGAAGAAAGGGATTAATGTTTCGAAATCTGTAAAATCTTCCAGTTCCACTAGCTTGAGAAAAGCTTCTTCAGAGAATAAGCAAAAAAGTAAAAGAACCACTGCCACCAATTCTACAAATTCTAAACTCAGTGTTGTAGGTTTTAGGGGGCGAAATTCATCATCTAATAAGAAGCAATCTCTTTCGTGA 1950 0.46 MLLEGSFFLSLKPQNIVKRCHIPRRSPSMAGATGRTLFSLSPSFTTRLSHHATRLPFFLTRSKPIAVLPRFRPLCSITATPETMDPEQMKHSMLLEKLRMRHLKDSAKTPEAKNPPKKGPAVAAENEMGKKSEGKKKVVEVGSFEELGISDEVMGAVREMGIEVPTEIQCIGVPAVLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGMLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKRRTSKSDGLGFQTILVTATMTKAVQLLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKNDNEDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLILATKIEEAVRKNESLEAITKESVRKDIARTQITEQRGRSKPLVKVSKAKHKSGGRTNAGNTGSGMKSGKGSPSAKSMKKGINVSKSVKSSSSTSLRKASSENKQKSKRTTATNSTNSKLSVVGFRGRNSSSNKKQSLS. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03945 649 MobiDBLite consensus disorder prediction 541 649 - -
Seca9g03945 649 Pfam Helicase conserved C-terminal domain 385 496 IPR001650 -
Seca9g03945 649 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 87 532 - -
Seca9g03945 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 508 IPR027417 -
Seca9g03945 649 Gene3D - 371 540 IPR027417 -
Seca9g03945 649 MobiDBLite consensus disorder prediction 564 581 - -
Seca9g03945 649 MobiDBLite consensus disorder prediction 588 649 - -
Seca9g03945 649 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Seca9g03945 649 Pfam DEAD/DEAH box helicase 166 347 IPR011545 GO:0003676|GO:0005524
Seca9g03945 649 CDD SF2_C_DEAD 373 505 - -
Seca9g03945 649 SMART helicmild6 414 496 IPR001650 -
Seca9g03945 649 SMART ultradead3 161 380 IPR014001 -
Seca9g03945 649 CDD DEADc 153 352 - -
Seca9g03945 649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 538 IPR001650 -
Seca9g03945 649 MobiDBLite consensus disorder prediction 105 134 - -
Seca9g03945 649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 360 IPR014001 -
Seca9g03945 649 Gene3D - 108 361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03945 Seca-Chr9 83070255 83084317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03945 141 518 Eukaryotic Initiation Factors Gene Family AT3G19760 27.792 2.06e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03945 - - gmx:100805709 912.909