Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03944 ATGTTACTGCCATTGCAGTGTTTTAATGCTGCAGGATATGTCATCCATAATGCAGATTTGAAGTCTGCAAAGAATTGTGCTTCAGCAGACAACAAGCAGTCAAATTCCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTCAATACATCGAAGAGGGGATTGTTGTTCCTGCTGAATTAAGATACTTGGTATTGGATGATGCAGATTGCATGCTCAGTAGTGGCCTTAGTCCTGAAATCCATAAAATTCTCAGACCCTTACAAAATCATGATTCAAAATCTACTGTCAAAAGGTTGCAAACTATTTTGGCAATTTCAACAATATCTGAGGTTTTGGGTGAAGAATCCCCTCTTGTAAAGCACCTTGAGCGTGATCATGCTGGAAATGTTTCCGCAATGTCTTTAGAAATGGAGCAAACAGAAGTCTTTCTTTTCACTGAGTCTCTGGATGCTCTTAGGAAAAAAGTGGTGGAGGCCATGGATTCCCTTTTGAAATAA 504 0.3968 MLLPLQCFNAAGYVIHNADLKSAKNCASADNKQSNSSIGLMIGTPCEILQYIEEGIVVPAELRYLVLDDADCMLSSGLSPEIHKILRPLQNHDSKSTVKRLQTILAISTISEVLGEESPLVKHLERDHAGNVSAMSLEMEQTEVFLFTESLDALRKKVVEAMDSLLK. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03944 167 SUPERFAMILY PABC (PABP) domain 112 163 IPR036053 GO:0003723
Seca9g03944 167 Gene3D - 117 167 - -
Seca9g03944 167 SMART poly_2 106 167 IPR002004 GO:0003723
Seca9g03944 167 Pfam DEAD/DEAH box helicase 31 106 IPR011545 GO:0003676|GO:0005524
Seca9g03944 167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 111 IPR027417 -
Seca9g03944 167 Pfam Poly-adenylate binding protein, unique domain 119 163 IPR002004 GO:0003723
Seca9g03944 167 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 111 - -
Seca9g03944 167 Gene3D - 8 116 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03944 Seca-Chr9 83061444 83062602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03944 100 165 Eukaryotic Initiation Factors Gene Family AT2G23350 47.143 1.59e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03944 - - aprc:113851459 272.322