Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03935 ATGGCGACGATAATCTCTGCACCGAAAATGATGATTCCGGCACATGCAACATTTAGCAGCGTTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAACGAGACGCAGTTGTATGATCTGTTCAGCCAAGTGGCTCATGTGGTTTCCGCTAGGGTTTGCAGGGATTACACGATGCGATCCTCTCTCGGTTACGCTTATGTGAACTTTGCCAATGCTCAAGATGCGGCTAATGCTATGGAACATCTGAACATCACTCCTCTGAATGGGAAACCGATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATCAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGTTGTGGATAACAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGTTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTTTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCATATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAAGGCTCAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAACATGCTAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAAGGAGCTGTTTTCTGAATATGGAACAATCACATCTTGCAAGATAATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCTGAGGAAGCAAATGAAGTTTTGAATAAAATGAATGGGAAGATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGTAAAGAAGAGAGGAAGGCTTTTCTACAGGCTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCTTTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATTCCATATTTTCCTGAAGGATATCTTGGATATCCATGGGCAACAGGACTTGCCCCTAAACAACAGTATTATGATCAAGGCACACCTGGTTACATGCCAACTCAACCAGCAGGATATGGCTACCAGCAACAATTCTATCCAGGTATGCACCCGGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGAGAGATAATCAGCGGCGATCTGCATTTCCTAACACACTTGCCTCAGCTTTGGCTTCTGCTACACTAGAAAATCAGCGTCTGATGTTGCGTGAACATCTTTATCCACTTGTGGACCATCTTACACTTAACCATCAGACAACAAAGGTGACTGAAACATTGCTGGAAATGGACCAGTCAGAGGTAATCCATTTGATTAAATCTCCTGAGGACTTGAAGAAAAAGGTGTCTGAGGCAATGCAGGTCCTTAATGAAGGTGCATCAGGTTCTGAAGTTGGTGATCAACTTGGTTGA 1746 0.4129 MATIISAPKMMIPAHATFSSVRFENVSLYVGDLEGNVNETQLYDLFSQVAHVVSARVCRDYTMRSSLGYAYVNFANAQDAANAMEHLNITPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVVVDNSGQSKGYGYVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFFETFTDEDLKELFGTHGTITSAVVMKDVNGKSRCFGFVNFESPYSAAAAVERLNGTTTNDEKVLFVGKAQRKAERNAELKAKYEQEKIKRYEKLQHANLYLKNLADNINDGKLKELFSEYGTITSCKIMVDSNGHSKGSGFVAFSTPEEANEVLNKMNGKMIQGKPLYVAVAQRKEERKAFLQAQFSQFQAQIGIPSFPEFSQFQAPNGIPYFPEGYLGYPWATGLAPKQQYYDQGTPGYMPTQPAGYGYQQQFYPGMHPVVAPNAIMPYHLQRDNQRRSAFPNTLASALASATLENQRLMLREHLYPLVDHLTLNHQTTKVTETLLEMDQSEVIHLIKSPEDLKKKVSEAMQVLNEGASGSEVGDQLG. 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03935 581 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 494 572 IPR002004 GO:0003723
Seca9g03935 581 FunFam Polyadenylate-binding protein 19 111 - -
Seca9g03935 581 CDD RRM2_I_PABPs 112 187 IPR045305 -
Seca9g03935 581 SUPERFAMILY RNA-binding domain, RBD 306 398 IPR035979 GO:0003676
Seca9g03935 581 Gene3D - 290 397 IPR012677 -
Seca9g03935 581 CDD RRM4_I_PABPs 310 386 - -
Seca9g03935 581 PANTHER RNA BINDING PROTEIN 24 88 - -
Seca9g03935 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Seca9g03935 581 Coils Coil 278 301 - -
Seca9g03935 581 Pfam Poly-adenylate binding protein, unique domain 502 567 IPR002004 GO:0003723
Seca9g03935 581 Gene3D - 114 188 IPR012677 -
Seca9g03935 581 FunFam Polyadenylate-binding protein 112 195 - -
Seca9g03935 581 Coils Coil 384 404 - -
Seca9g03935 581 Gene3D - 493 571 - -
Seca9g03935 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Seca9g03935 581 CDD RRM3_I_PABPs 204 284 - -
Seca9g03935 581 SUPERFAMILY RNA-binding domain, RBD 197 289 IPR035979 GO:0003676
Seca9g03935 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Seca9g03935 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Seca9g03935 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Seca9g03935 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Seca9g03935 581 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 491 IPR006515 GO:0003723
Seca9g03935 581 SMART rrm2_1 310 382 IPR003954 GO:0003676
Seca9g03935 581 SMART rrm2_1 206 278 IPR003954 GO:0003676
Seca9g03935 581 SMART rrm2_1 115 187 IPR003954 GO:0003676
Seca9g03935 581 SMART poly_2 506 570 IPR002004 GO:0003723
Seca9g03935 581 FunFam Polyadenylate-binding protein 292 397 - -
Seca9g03935 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Seca9g03935 581 SMART rrm1_1 115 187 IPR000504 GO:0003723
Seca9g03935 581 SMART rrm1_1 27 100 IPR000504 GO:0003723
Seca9g03935 581 SMART rrm1_1 206 279 IPR000504 GO:0003723
Seca9g03935 581 SMART rrm1_1 310 382 IPR000504 GO:0003723
Seca9g03935 581 SUPERFAMILY PABC (PABP) domain 450 570 IPR036053 GO:0003723
Seca9g03935 581 Gene3D - 19 113 IPR012677 -
Seca9g03935 581 Gene3D - 190 289 IPR012677 -
Seca9g03935 581 SUPERFAMILY RNA-binding domain, RBD 26 193 IPR035979 GO:0003676
Seca9g03935 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03935 Seca-Chr9 82756467 82759861 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03935 25 580 Eukaryotic Initiation Factors Gene Family AT1G71770 49.682 0.0 543