Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03933 ATGGCGACGGTAATCTCTGCACCGAAAATGACGATTCCGGCACATGCAGCATTTAGCAGCGTTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAACGAGAAGCAGCTGTATGATCTGTTCAGCCAAGTGGCTCATGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTACGCTTATGTGAACTTTGCCAATGCTCAAGATGCGGCTAATGCTATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCGATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATCAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTTCCTTTGGAACTGTGCTTTCCTGTAAGGTGGTTGTGGATAACAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGTTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCGGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCGTGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGCCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAAGGCTCAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAACAGATATGAGAAACTGCAACATGCTAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAAGGAGTTGTTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTAGTTTTGTTGCCTTCTCTACTCCTGAGGAATCAAATGAAGCTTTGAATAAAATGAATGGGAAGATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGTAAAGAAGAGAGGAAGGCTTTTCTGCAGACTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCTTTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATTCCATATTTTCCTGAAGGATATCCTGGATATCCATGGGCAACAGGATTTTCCCCTGAACAACAGTATTATGATCAAGGCACACCTGGTTACATGCCAACTCAACCAGTAGGATATGGCTACCAGCAACAATTCTATCCAGGTATGCACCCTGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGAGGCAGGGTCATCCTAGGCAGTGGATGGATTATCGTAGAGGTGGAAACCGCCACCACAACCAGAAGCAACAACATAACTCTAACCAACGATTTAGAGATAATCAGCGGCGATCTGCATTGCCTAACACACTTGCCTCAGCTTTGGCTTCTGCTACACTAGAAAATCAGCGTCTGATGTTGCGTGAACATCTTTATCCACTTGTGGACCAACTTACACTTAACCATCAGACAACAAAGGTGACTGAAACTTTGCTGGAAATGGACCAGTCAGAGGTAATCCATTTGATTGAATCTCCTGAGGACTTGAAGAAAAAGGTGTCTGAGGTAATGCAGGTCCTTAAAGAAGGTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGTTGA 1839 0.4209 MATVISAPKMTIPAHAAFSSVRFENVSLYVGDLEGNVNEKQLYDLFSQVAHVVSARVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFASFGTVLSCKVVVDNSGQSKGYGYVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRRERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTRGTITSAVVMKDVNGKSRCFGFVNFESPDSAAAAVERLNGTTTNDEKVLFVGKAQRKAERNAELKAKYEQEKINRYEKLQHANLYLKNLADNINDGKLKELFSEYGTITSCKVMVDSNGHSKGSSFVAFSTPEESNEALNKMNGKMIQGKPLYVAVAQRKEERKAFLQTQFSQFQAQIGIPSFPEFSQFQAPNGIPYFPEGYPGYPWATGFSPEQQYYDQGTPGYMPTQPVGYGYQQQFYPGMHPVVAPNAIMPYHLQRQGHPRQWMDYRRGGNRHHNQKQQHNSNQRFRDNQRRSALPNTLASALASATLENQRLMLREHLYPLVDQLTLNHQTTKVTETLLEMDQSEVIHLIESPEDLKKKVSEVMQVLKEGASGSEVGDQLG. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03933 612 SUPERFAMILY RNA-binding domain, RBD 26 193 IPR035979 GO:0003676
Seca9g03933 612 Gene3D - 197 306 IPR012677 -
Seca9g03933 612 FunFam Polyadenylate-binding protein 19 111 - -
Seca9g03933 612 CDD RRM2_I_PABPs 112 187 IPR045305 -
Seca9g03933 612 SUPERFAMILY RNA-binding domain, RBD 200 291 IPR035979 GO:0003676
Seca9g03933 612 SMART rrm2_1 206 278 IPR003954 GO:0003676
Seca9g03933 612 SMART rrm2_1 27 100 IPR003954 GO:0003676
Seca9g03933 612 SMART rrm2_1 310 382 IPR003954 GO:0003676
Seca9g03933 612 SMART rrm2_1 115 187 IPR003954 GO:0003676
Seca9g03933 612 CDD RRM4_I_PABPs 310 386 - -
Seca9g03933 612 SUPERFAMILY PABC (PABP) domain 476 601 IPR036053 GO:0003723
Seca9g03933 612 SMART poly_2 537 601 IPR002004 GO:0003723
Seca9g03933 612 Gene3D - 115 188 IPR012677 -
Seca9g03933 612 Gene3D - 524 602 - -
Seca9g03933 612 Coils Coil 278 301 - -
Seca9g03933 612 Pfam Poly-adenylate binding protein, unique domain 533 598 IPR002004 GO:0003723
Seca9g03933 612 SMART rrm1_1 27 100 IPR000504 GO:0003723
Seca9g03933 612 SMART rrm1_1 115 187 IPR000504 GO:0003723
Seca9g03933 612 SMART rrm1_1 310 382 IPR000504 GO:0003723
Seca9g03933 612 SMART rrm1_1 206 279 IPR000504 GO:0003723
Seca9g03933 612 SUPERFAMILY RNA-binding domain, RBD 306 397 IPR035979 GO:0003676
Seca9g03933 612 Coils Coil 384 404 - -
Seca9g03933 612 CDD RRM3_I_PABPs 204 284 - -
Seca9g03933 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Seca9g03933 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Seca9g03933 612 FunFam Polyadenylate-binding protein 112 195 - -
Seca9g03933 612 Gene3D - 307 408 IPR012677 -
Seca9g03933 612 Gene3D - 19 114 IPR012677 -
Seca9g03933 612 PANTHER RNA BINDING PROTEIN 24 88 - -
Seca9g03933 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Seca9g03933 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Seca9g03933 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Seca9g03933 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Seca9g03933 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Seca9g03933 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Seca9g03933 612 MobiDBLite consensus disorder prediction 493 526 - -
Seca9g03933 612 FunFam Polyadenylate-binding protein 196 291 - -
Seca9g03933 612 FunFam Poly(A) binding protein cytoplasmic 1 like 301 390 - -
Seca9g03933 612 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 518 IPR006515 GO:0003723
Seca9g03933 612 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 525 603 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03933 Seca-Chr9 82628101 82631491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03933 2 604 Eukaryotic Initiation Factors Gene Family AT4G34110 52.885 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03933 K13126 - gmx:100783163 813.527