Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03932 ATGACGATTCCGGCACATGCAGCATTTAGCAGCGTTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAACGAGACGCAGCTGTATGATCGGTTCAGCCAAGTGGCTCATGTGGTTTCCGCTAGGGCTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTACGCTTATGTGAACTTTGCCAATGCTCAAGATGGTTTGTATTTAGAATTTGTGATTTTTTTTCATATTTATATTGCAGCGGCTAATGCTATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCGATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATCAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTTCCTTTGGAACTGTGCTTTCCTGTAAGGTGGTTGTGGATAACAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGTTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAAGAAAGGGCTCAAGAAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCGTGGTACAATCACTAGTGTTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGCCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAAGGCTCAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAACAGATATGAGAAACTGCAACATGCTAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAAGGAGCTGTTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCTGAGGAATCAAATGAAGCTTTGAATAAAATGAATGGGAAGATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGTAAAGAAGAGAGGAAGGCTTTTCTGCAGGTAATTCCCCCTTCTTATCTCATCATTCATATATAA 1239 0.3987 MTIPAHAAFSSVRFENVSLYVGDLEGNVNETQLYDRFSQVAHVVSARACRDHTMRSSLGYAYVNFANAQDGLYLEFVIFFHIYIAAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFASFGTVLSCKVVVDNSGQSKGYGYVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQENGSPKFTNVYVKNFSETFTDEDLKELFGTRGTITSVVVMKDVNGKSRCFGFVNFESPDSAAAAVERLNGTTTNDEKVLFVGKAQRKAERNAELKAKYEQEKINRYEKLQHANLYLKNLADNINDGKLKELFSEYGTITSCKVMVDSNGHSKGSGFVAFSTPEESNEALNKMNGKMIQGKPLYVAVAQRKEERKAFLQVIPPSYLIIHI. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03932 412 PANTHER RNA BINDING PROTEIN 86 399 - -
Seca9g03932 412 FunFam Polyadenylate-binding protein 202 297 - -
Seca9g03932 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Seca9g03932 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Seca9g03932 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 280 IPR000504 GO:0003723
Seca9g03932 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 69 IPR000504 GO:0003723
Seca9g03932 412 Coils Coil 284 307 - -
Seca9g03932 412 Gene3D - 121 194 IPR012677 -
Seca9g03932 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Seca9g03932 412 SUPERFAMILY RNA-binding domain, RBD 312 399 IPR035979 GO:0003676
Seca9g03932 412 FunFam Polyadenylate-binding protein 298 403 - -
Seca9g03932 412 SMART rrm2_1 212 284 IPR003954 GO:0003676
Seca9g03932 412 SMART rrm2_1 121 193 IPR003954 GO:0003676
Seca9g03932 412 SMART rrm2_1 316 388 IPR003954 GO:0003676
Seca9g03932 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Seca9g03932 412 SUPERFAMILY RNA-binding domain, RBD 17 199 IPR035979 GO:0003676
Seca9g03932 412 SUPERFAMILY RNA-binding domain, RBD 202 296 IPR035979 GO:0003676
Seca9g03932 412 FunFam Polyadenylate-binding protein 114 201 - -
Seca9g03932 412 CDD RRM3_I_PABPs 210 290 - -
Seca9g03932 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 110 IPR000504 GO:0003723
Seca9g03932 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723
Seca9g03932 412 Gene3D - 296 399 IPR012677 -
Seca9g03932 412 Gene3D - 196 295 IPR012677 -
Seca9g03932 412 CDD RRM2_I_PABPs 118 193 IPR045305 -
Seca9g03932 412 SMART rrm1_1 316 388 IPR000504 GO:0003723
Seca9g03932 412 SMART rrm1_1 121 193 IPR000504 GO:0003723
Seca9g03932 412 SMART rrm1_1 18 106 IPR000504 GO:0003723
Seca9g03932 412 SMART rrm1_1 212 285 IPR000504 GO:0003723
Seca9g03932 412 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 18 402 IPR006515 GO:0003723
Seca9g03932 412 CDD RRM4_I_PABPs 316 392 - -
Seca9g03932 412 Gene3D - 12 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03932 Seca-Chr9 82613645 82615758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03932 118 402 Eukaryotic Initiation Factors Gene Family AT4G34110 34.965 3.39e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03932 K13126 - gmx:100783163 601.282