Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03927 ATGGCGACGGTAATCTCTACACCGAAAATGACGATTCCGGCACATGCAACATTTAGCAGCGTTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAACGAGACGCAGTTGTATGATCTGTTCAGCCAAGTGGCTCATGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTACGCTTATGTGAACTTTCCAATGCTCAAGATGGTTTCGGCTAATGCTATGGAACATCTGAACTTCACTCCTCTGAATGGTAAACCGATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATCAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGTTGTGGATAACAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGACAGTGAAAAGTCTGCACAAGATTCCATCCAACAATTAAATGGTATGTTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGTTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCATATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGAGAAAGGCTCAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAACATGCTAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAAGGAGCTGTTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCTGAGGAAGCAAATGAAGTTTTGAATAAAATGAATGGGAAGATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGTAAAGAAGTGAGGAAGGCTTTTCTGCAGTCTCACAAATTAGCTTATCTGCAAGCTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCTTTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATTCCATATTTGCCTGAAGGATATCCTGGATATCCATGGGCAACAGGACTTGCCCCTGAACAACAGTATTATGATCAAGGCACACCTGGTTACATGCCAACTCAACCAGCAGGATATGGCTACCAGCAACAATTCTATCCAGGTATGCACCCTGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGATGCAGGGTCATCCTAGGCAGAGGATGGATTATCGTAGAGGTGGAAACCGCCACCACAACCAGATGTTGCGTGAACATCTTTATCCACTTGTGGACCATCTTACACTTAACCATCAGACAACAAAGGTGACTGAAACTTTGCTGGAAATGGACCAGTCAGAGGTAATCCATTTGATTGAATCTCCTGAGGACTTGAAGAAAAAGGTGTTTGAGGCAATGCAGGTCCTTAATGAAGGTGCATCAGGTTCTGAAGTTGGTGATCAACTTGGTTGA 1755 0.4154 MATVISTPKMTIPAHATFSSVRFENVSLYVGDLEGNVNETQLYDLFSQVAHVVSARVCRDHTMRSSLGYAYVNFPMLKMVSANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVVVDNSGQSKGYGYVQFDSEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTHGTITSVVVMKDVNGKSRCFGFVNFESPYSAAAAVERLNGTTTNDEKVLFVRKAQRKAERNAELKAKYEQEKIKRYEKLQHANLYLKNLADNINDGKLKELFSEYGTITSCKVMVDSNGHSKGSGFVAFSTPEEANEVLNKMNGKMIQGKPLYVAVAQRKEVRKAFLQSHKLAYLQAQFSQFQAQIGIPSFPEFSQFQAPNGIPYLPEGYPGYPWATGLAPEQQYYDQGTPGYMPTQPAGYGYQQQFYPGMHPVVAPNAIMPYHLQMQGHPRQRMDYRRGGNRHHNQMLREHLYPLVDHLTLNHQTTKVTETLLEMDQSEVIHLIESPEDLKKKVFEAMQVLNEGASGSEVGDQLG. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03927 584 SMART rrm2_1 116 188 IPR003954 GO:0003676
Seca9g03927 584 SMART rrm2_1 207 279 IPR003954 GO:0003676
Seca9g03927 584 SMART rrm2_1 311 383 IPR003954 GO:0003676
Seca9g03927 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723
Seca9g03927 584 SMART poly_2 509 573 IPR002004 GO:0003723
Seca9g03927 584 SMART rrm1_1 116 188 IPR000504 GO:0003723
Seca9g03927 584 SMART rrm1_1 27 101 IPR000504 GO:0003723
Seca9g03927 584 SMART rrm1_1 207 280 IPR000504 GO:0003723
Seca9g03927 584 SMART rrm1_1 311 383 IPR000504 GO:0003723
Seca9g03927 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Seca9g03927 584 CDD RRM3_I_PABPs 205 285 - -
Seca9g03927 584 PANTHER RNA BINDING PROTEIN 81 427 - -
Seca9g03927 584 SUPERFAMILY RNA-binding domain, RBD 197 290 IPR035979 GO:0003676
Seca9g03927 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 105 IPR000504 GO:0003723
Seca9g03927 584 FunFam Poly(A) binding protein cytoplasmic 1 like 302 391 - -
Seca9g03927 584 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 497 575 IPR002004 GO:0003723
Seca9g03927 584 Pfam Poly-adenylate binding protein, unique domain 512 570 IPR002004 GO:0003723
Seca9g03927 584 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 506 IPR006515 GO:0003723
Seca9g03927 584 SUPERFAMILY RNA-binding domain, RBD 26 194 IPR035979 GO:0003676
Seca9g03927 584 Gene3D - 114 189 IPR012677 -
Seca9g03927 584 Coils Coil 279 302 - -
Seca9g03927 584 SUPERFAMILY RNA-binding domain, RBD 307 392 IPR035979 GO:0003676
Seca9g03927 584 Gene3D - 191 289 IPR012677 -
Seca9g03927 584 FunFam Polyadenylate-binding protein 109 196 - -
Seca9g03927 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Seca9g03927 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 99 IPR000504 GO:0003723
Seca9g03927 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Seca9g03927 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Seca9g03927 584 Gene3D - 290 396 IPR012677 -
Seca9g03927 584 Gene3D - 17 111 IPR012677 -
Seca9g03927 584 SUPERFAMILY PABC (PABP) domain 461 573 IPR036053 GO:0003723
Seca9g03927 584 CDD RRM2_I_PABPs 113 188 IPR045305 -
Seca9g03927 584 CDD RRM4_I_PABPs 311 387 - -
Seca9g03927 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Seca9g03927 584 Gene3D - 509 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03927 Seca-Chr9 82540590 82543974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03927 2 576 Eukaryotic Initiation Factors Gene Family AT4G34110 49.685 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03927 K13126 - aew:130776750 693.73