Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03919 ATGGCGACGGTAATCTCTGCACCGAAAATGACGATTCCGGCACATGCAACATTTAGCAGCGTTCGATTCAAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAACGAGACGCAGCTGTATGATCTGTTCAGCCAAGTGGCTCATGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTACGCTTATGTGAACTTTTCCAATGCTCAAGATGCGGCTAATGCTATGGAACATCTGAACTTCACTCCTCTAAATGGGAAATCGATTCGAATTATGTTTTCTCATAGAAATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATCAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGTTGTGGATAACAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAATTAAATGGTATGTTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTAATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAAGGCTCAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAACATGCTAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAAGGAGCTGTTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCTGAGGAAGCAAATGAAGCTTTGAATAAAATGAATGGGAAGATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGTAAAGAAGAGAGGAAGGCTTTTCTACAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCTTTCCCTGAGTTTTCTCAATTCCAAGCAGCAAATGGAATTCCACATTTGCCTGAAGGATATCCTGGATATCCATGGGCAACAGGACTTGCCCCTGAACAACATTATTATGATCAAGGCACACCTGGTTACATTCCAACTCAACCAGCAGGATATGGCTACCAGCAACAATTCTATCCAGGTATGCACCCTGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGAGGCAGTGTCATCCTAGGCAGAGGATGGATTATCGTAGAGGTGGAAACCGCCACCACAACCAGATGTTGCGTGAACATCTTTATCCACTTGTGGACCATCTTACACTTAACCATCAAACAGCAAAGGTGACTGAAACTTTGCTGGAAATGGACCAGTCAGAGGTAATCCATTTGATTGAATCTCCTGAGGACTTGAAGAAAAAGGTGTTTGAGGCAATGCAGGTCCTTAATGAAGGTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGTTGA 1722 0.4164 MATVISAPKMTIPAHATFSSVRFKNVSLYVGDLEGNVNETQLYDLFSQVAHVVSARVCRDHTMRSSLGYAYVNFSNAQDAANAMEHLNFTPLNGKSIRIMFSHRNPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVVVDNSGQSKGYGYVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTNEDLKELFGTHGTITSAVVMKDVNGKSRCFGFVNFESPDSAAAAVERLNGTTTNDEKVLFVGKAQRKAERNAELKAKYEQEKIKRYEKLQHANLYLKNLADNINDGKLKELFSEYGTITSCKVMVDSNGHSKGSGFVAFSTPEEANEALNKMNGKMIQGKPLYVAVAQRKEERKAFLQFSQFQAQIGIPSFPEFSQFQAANGIPHLPEGYPGYPWATGLAPEQHYYDQGTPGYIPTQPAGYGYQQQFYPGMHPVVAPNAIMPYHLQRQCHPRQRMDYRRGGNRHHNQMLREHLYPLVDHLTLNHQTAKVTETLLEMDQSEVIHLIESPEDLKKKVFEAMQVLNEGASGSEVGDQLG. 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03919 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Seca9g03919 573 Gene3D - 189 290 IPR012677 -
Seca9g03919 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Seca9g03919 573 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 486 564 IPR002004 GO:0003723
Seca9g03919 573 FunFam Polyadenylate-binding protein 112 195 - -
Seca9g03919 573 SMART poly_2 498 562 IPR002004 GO:0003723
Seca9g03919 573 Pfam Poly-adenylate binding protein, unique domain 501 559 IPR002004 GO:0003723
Seca9g03919 573 CDD RRM2_I_PABPs 112 187 IPR045305 -
Seca9g03919 573 CDD RRM4_I_PABPs 310 386 - -
Seca9g03919 573 FunFam Polyadenylate-binding protein 196 291 - -
Seca9g03919 573 SMART rrm2_1 310 382 IPR003954 GO:0003676
Seca9g03919 573 SMART rrm2_1 206 278 IPR003954 GO:0003676
Seca9g03919 573 SMART rrm2_1 115 187 IPR003954 GO:0003676
Seca9g03919 573 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 498 IPR006515 GO:0003723
Seca9g03919 573 SUPERFAMILY RNA-binding domain, RBD 306 394 IPR035979 GO:0003676
Seca9g03919 573 SUPERFAMILY RNA-binding domain, RBD 26 193 IPR035979 GO:0003676
Seca9g03919 573 Coils Coil 278 301 - -
Seca9g03919 573 Gene3D - 498 563 - -
Seca9g03919 573 FunFam Polyadenylate-binding protein 292 397 - -
Seca9g03919 573 Gene3D - 115 188 IPR012677 -
Seca9g03919 573 Gene3D - 291 395 IPR012677 -
Seca9g03919 573 CDD RRM3_I_PABPs 204 284 - -
Seca9g03919 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Seca9g03919 573 SUPERFAMILY RNA-binding domain, RBD 197 289 IPR035979 GO:0003676
Seca9g03919 573 SUPERFAMILY PABC (PABP) domain 457 562 IPR036053 GO:0003723
Seca9g03919 573 FunFam Polyadenylate-binding protein 19 111 - -
Seca9g03919 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Seca9g03919 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Seca9g03919 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Seca9g03919 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Seca9g03919 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Seca9g03919 573 PANTHER RNA BINDING PROTEIN 24 88 - -
Seca9g03919 573 SMART rrm1_1 206 279 IPR000504 GO:0003723
Seca9g03919 573 SMART rrm1_1 115 187 IPR000504 GO:0003723
Seca9g03919 573 SMART rrm1_1 310 382 IPR000504 GO:0003723
Seca9g03919 573 SMART rrm1_1 27 100 IPR000504 GO:0003723
Seca9g03919 573 Gene3D - 19 114 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03919 Seca-Chr9 82310970 82314357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03919 2 565 Eukaryotic Initiation Factors Gene Family AT4G34110 51.043 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03919 K13126 - aew:130776750 708.753